Pairwise Alignments

Query, 871 a.a., ATPase AAA-2 domain protein (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 857 a.a., ATP-dependent chaperone ClpB from Serratia liquefaciens MT49

 Score =  946 bits (2445), Expect = 0.0
 Identities = 483/847 (57%), Positives = 629/847 (74%), Gaps = 4/847 (0%)

Query: 1   MNMEKFTERSRGFLQAAQTIAMRENHQRMVPEHLLKALLDDEEGLAANLIARAGGDAARV 60
           M +++ T + +  L  AQ++A+  ++Q + P HL+ ALL+ + G    L+  AG DA RV
Sbjct: 1   MRLDRLTNKFQLALADAQSLALGRDNQFIEPLHLMSALLNQDGGTVRPLLTSAGIDAGRV 60

Query: 61  REALAAALDKLPKVSGDGAQTYLDQQTAKVLDEAEKLATKAGDSFVPVERILTALAVTKS 120
           R  +  AL +LP+V G G       +  +VL+  +KLA K  D F+  E  + A+   + 
Sbjct: 61  RTEIEQALSRLPQVEGTGGDVQPSHELVRVLNLCDKLAQKRADKFISSELFVLAVLEDRG 120

Query: 121 GAKTALEAGGVSAQALNGAINDIRKGRTADTASAESGYDALKKFARDLTEAAADGKIDPI 180
                L+A G +   ++ AI  +R G + +   AE    ALKK+  DLTE A  GK+DP+
Sbjct: 121 NLTDLLKAAGATTDKISKAIEQMRGGDSVEDQGAEDQRQALKKYTIDLTERAEQGKLDPV 180

Query: 181 IGRDEEIRRAMQVLSRRTKNNPVLIGEPGVGKTAIAEGLALRIINGDVPESLRNKKLMAL 240
           IGRDEEIRR +QVL RRTKNNPVLIGEPGVGKTAI EGLA RIING+VPE L++K++++L
Sbjct: 181 IGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKHKRVLSL 240

Query: 241 DMGSLIAGAKYRGEFEERLKSVLSEVTAAAGEIILFIDEMHTLVGAGKADGAMDASNLLK 300
           DMG+LIAGAKYRGEFEERLK+VLS+++   G +ILFIDE+HT+VGAGKADGAMDA N+LK
Sbjct: 241 DMGALIAGAKYRGEFEERLKAVLSDLSKQEGSVILFIDELHTMVGAGKADGAMDAGNMLK 300

Query: 301 PALARGELHCVGATTLDEYRKYVEKDAALARRFQPVMVQEPTVEDTVSILRGIKEKYELH 360
           PALARGELHCVGATTLDEYR+Y+EKDAAL RRFQ V V EP+VEDT++ILRG+KE+YELH
Sbjct: 301 PALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELH 360

Query: 361 HGVRISDSALVAAATLSHRYITDRFLPDKAIDLVDEAASRLRMEVDSKPEELDALDREIL 420
           H V+I+D A+VAAATLSHRYI+DR LPDKAIDL+DEAAS +RM++DSKPE LD L+R I+
Sbjct: 361 HHVQITDPAIVAAATLSHRYISDRQLPDKAIDLIDEAASSIRMQMDSKPESLDRLERRII 420

Query: 421 QKQIEAEALRLEDDAASRERLASLEKDLSDLQQRSAEMTAQWQSERDKLASARDLKEHLD 480
           Q ++E +AL  E D AS++RL  L  +L   ++  +E+  +W++E+  L+  +++K  L+
Sbjct: 421 QLKLEQQALSKESDDASKKRLEMLSGELEQKEREYSELEEEWKAEKASLSGTQNIKADLE 480

Query: 481 KARAELEIAKREGNLARAGELSYGVIPGLEKQLAEAESGEGDVM--VEEAVRPEQIASVV 538
           +A+  LE A+R G+L R  EL YG IP LEKQLA A   EG  M  +   V   +IA V+
Sbjct: 481 QAKISLEQARRVGDLGRMSELQYGKIPELEKQLAAATLAEGKTMKLLRNRVTDAEIAEVL 540

Query: 539 ERWTGIPTSKMLEGEREKLLRMEEEIGRRVIGQKTAVNAVANAVRRARAGLNDENRPLGS 598
            R TGIP ++MLEGER+KLLR+E+E+  RVIGQ  AV+AV+NA+RR+RAGL+D NRP+GS
Sbjct: 541 ARATGIPVARMLEGERDKLLRLEQELHSRVIGQNEAVSAVSNAIRRSRAGLSDPNRPIGS 600

Query: 599 FLFLGPTGVGKTELTKAVAEFLFDDDSAMVRIDMSEFMEKHAVARLIGAPPGYVGYDEGG 658
           FLFLGPTGVGKTEL KA+A FLFD D AMVRIDMSEFMEKH+V+RL+GAPPGYVGY+EGG
Sbjct: 601 FLFLGPTGVGKTELCKALASFLFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGG 660

Query: 659 VLTEAVRRRPYQVVLFDEVEKAHPDVFNVLLQVLDDGVLTDGQGRTVDFKQTLIVLTSNL 718
            LTEAVRRRPY V+L DEVEKAHPDVFN+LLQVLDDG LTDGQGRTVDF+ T++++TSNL
Sbjct: 661 YLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL 720

Query: 719 GAQALSQLPDGADASAAKRDVMDAVRAHFRPEFLNRLDETIIFDRLVRDDMDAIVDIQLA 778
           G+  + +     + +  K  VM+ V  HFRPEF+NR+DE ++F  L +  +  I  IQLA
Sbjct: 721 GSDLIQEHFGQMNYTQMKESVMEMVTHHFRPEFINRIDEVVVFHPLGQKHIAEIAKIQLA 780

Query: 779 RLQKRLDARKLTLALDDAARSWLADEGYDPVFGARPLKRVIQRALQDQLAEMILAGDVTD 838
           RL KRL+ R   + + + A   L   G+DPV+GARPLKR IQ+ +++ LA+ IL+G +  
Sbjct: 781 RLYKRLEERGYEVTMTEPALELLGKTGFDPVYGARPLKRAIQQEIENPLAQQILSGKLIP 840

Query: 839 GETIPVS 845
           G  IPV+
Sbjct: 841 G--IPVT 845