Pairwise Alignments

Query, 498 a.a., ABC transporter related (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 499 a.a., L-arabinose transporter ATP-binding protein from Pseudomonas simiae WCS417

 Score =  292 bits (747), Expect = 2e-83
 Identities = 175/486 (36%), Positives = 266/486 (54%), Gaps = 8/486 (1%)

Query: 2   NGLQKSFGKNNVLRGIDLTLDPGSVTVLMGANGAGKSTLVKVICGQHRADGGTMRLATNA 61
           NG+ K F     L  I     P  V  LMG NGAGKSTL+K++ G +    GT+++    
Sbjct: 9   NGIGKEFPGVKALSQISFEARPREVHALMGENGAGKSTLLKILGGAYLPSSGTLQIGEQT 68

Query: 62  FDPEDAADAIRQGVVTVHQSIDDGVIPDLDVANNLMLDRLAEHSHGLFVRERHLRTEAAK 121
            D + AAD+I  GV  +HQ +   ++P++ VA NL L  L        V    LR +A  
Sbjct: 69  MDFKSAADSIACGVAVIHQELH--LVPEMTVAENLFLGHLPTRFG--VVNRSQLRKQALA 124

Query: 122 VAAAMGIEVNLRARVSDLSVADRQMIAIARAMARAPKVLILDEPTSSLSATEADRLFELI 181
               +  E++   ++  LS+  RQ++ IA+A++R   V+  DEPTSSLSA E DRL  +I
Sbjct: 125 CLKGLADEIDPDEKLGRLSLGQRQLVEIAKALSRGAHVIAFDEPTSSLSAREIDRLMAII 184

Query: 182 DRLRAQGVAILYISHRMSDIRRIADRIVVMRDGMISGVF-ETEPLDLEAAVTAMLGHRMT 240
            RLR +G  +LY+SHRM ++ RI + + V +DG     F +   L  +  VT M+G  + 
Sbjct: 185 TRLRDEGKVVLYVSHRMEEVFRICNAVTVFKDGRYVRTFDDMNALSHDQLVTCMVGRDIQ 244

Query: 241 EV-DAEVRQGTHPVLEIKNLQLFEGASPITLTAHDGEVVALVGLLGSGKSRLAEILFGIA 299
           ++ D   R+     L+++ L       P++L  H GE++ L GL+G+G++ L  +L G+ 
Sbjct: 245 DIYDYRQREQGEVALKVEGLLGPGLREPVSLNVHKGEILGLFGLVGAGRTELFRLLSGLT 304

Query: 300 RPIRGSIRIKGKDYSPRSVKDAIAQGVFMSPKDRGTNAVIPAFDIADNMTLPFLQGMSV- 358
           R   GS+ + G+    RS +DAIA GV + P+DR    +IP   +A+N+ +      S  
Sbjct: 305 RSTAGSLALCGQTLQLRSPRDAIAAGVLLCPEDRKKEGIIPLSSVAENINISARGAHSTF 364

Query: 359 GSFLKSRQQRGTAQGMVDRLGIVCQSVRDGIGTLSGGNQQKVMIARWLLEPAQVLLLDEP 418
           G  L+   +   A   +  + +   +    I  LSGGNQQK ++ RWL  P +VLLLDEP
Sbjct: 365 GWLLRDGWETTNADRQIKAMKVKTPNAEQKIMYLSGGNQQKAILGRWLSMPMKVLLLDEP 424

Query: 419 FQGVDIGARRDIGHHI-RATTQGRATLVFLAEIDEALEIADRIVVMSEGAIVGEHTNRNI 477
            +G+DIGA+ +I   I      G A +V  +++ E + I+DRI+VMSEGA+ GE T    
Sbjct: 425 TRGIDIGAKSEIYQIIHNLAASGIAVIVVSSDLMEVMGISDRILVMSEGALTGELTRDQA 484

Query: 478 DLAALV 483
           D A L+
Sbjct: 485 DEARLL 490