Pairwise Alignments

Query, 498 a.a., ABC transporter related (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 510 a.a., D-ribose transporter ATP-binding protein from Pseudomonas simiae WCS417

 Score =  276 bits (705), Expect = 2e-78
 Identities = 169/478 (35%), Positives = 264/478 (55%), Gaps = 11/478 (2%)

Query: 1   MNGLQKSFGKNNVLRGIDLTLDPGSVTVLMGANGAGKSTLVKVICGQHRAD-GGTMRLAT 59
           M G+ K+F    VL+ + L + PG +  LMG NGAGKSTL+K++ G ++AD GG +R+A 
Sbjct: 9   MQGISKTFNGLRVLKTVGLKVYPGEIHALMGENGAGKSTLMKILSGAYQADPGGEIRIAG 68

Query: 60  NAFDPEDAADAIRQGVVTVHQSIDDGVIPDLDVANNLMLDRLAEHSHGLFVRERHLRTEA 119
                 D A A   G+  ++Q +   + P+L VA N+ L R  E   G  +  + +    
Sbjct: 69  QLIPTFDPATAKALGIAVIYQELS--LCPNLSVAENIYLGR--ELRRGWTIDRKGMEAGC 124

Query: 120 AKVAAAMGIEVNLRARVSDLSVADRQMIAIARAMARAPKVLILDEPTSSLSATEADRLFE 179
            +V   +G E     RVS LS+A+RQ++ IARA+    K+L++DEPT+ LS+ E DRLF 
Sbjct: 125 IEVLQRLGAEFTPATRVSSLSIAERQLVEIARALHAHAKILVMDEPTTPLSSRETDRLFA 184

Query: 180 LIDRLRAQGVAILYISHRMSDIRRIADRIVVMRDGMISGVFETEPLDLEAAVTAMLGHRM 239
           LI +LR+QG+AI+YISHRM++I  ++DR+ V+RDG   G    + L  EA V  M+G  +
Sbjct: 185 LIKQLRSQGLAIIYISHRMAEIYALSDRVSVLRDGHYIGELTRDALSAEALVKMMVGRDL 244

Query: 240 TEVDAEVRQGTHP---VLEIKNLQLFEGASPITLTAHDGEVVALVGLLGSGKSRLAEILF 296
           +    +     +P   V+ ++++   +     +   H GEV+ + GL+G+G++ LA ++F
Sbjct: 245 SGFYKKEHAAYNPGNVVMRVRDMADGKRVRHCSFDLHAGEVLGIAGLVGAGRTELARLIF 304

Query: 297 GIARPIRGSIRIKGKDYSP-RSVKDAIAQGVFMSPKDRGTNAVIPAFDIADNMTL-PFLQ 354
                  G++ + GK  +P R+  DAI  GV    +DR    +     +ADN+ +   + 
Sbjct: 305 AADPRTSGTLEVVGKAVTPLRTPADAIRAGVVYLTEDRKAQGLFLDMSVADNINVCACVP 364

Query: 355 GMSVGSFLKSRQQRGTAQGMVDRLGIVCQSVRDGIGTLSGGNQQKVMIARWLLEPAQVLL 414
               G  L        +   +  L I   S +   G LSGGNQQKV++AR L     VL+
Sbjct: 365 DAHAGGVLDRDHALQRSNDAIKSLSIRVASGKVNAGALSGGNQQKVLLARLLEVKPHVLI 424

Query: 415 LDEPFQGVDIGARRDIGHHIRATTQ-GRATLVFLAEIDEALEIADRIVVMSEGAIVGE 471
           LDEP +GVDIG++ +I   I    Q G   +V  +E+ E +   DR+++M EG +V E
Sbjct: 425 LDEPTRGVDIGSKSEIYRIINQLAQAGIGIVVISSELPEIIGTCDRVLIMREGQLVAE 482



 Score = 56.6 bits (135), Expect = 2e-12
 Identities = 66/244 (27%), Positives = 114/244 (46%), Gaps = 14/244 (5%)

Query: 252 PVLEIKNL-QLFEGA---SPITLTAHDGEVVALVGLLGSGKSRLAEILFGI--ARPIRGS 305
           P+LE++ + + F G      + L  + GE+ AL+G  G+GKS L +IL G   A P  G 
Sbjct: 5   PLLEMQGISKTFNGLRVLKTVGLKVYPGEIHALMGENGAGKSTLMKILSGAYQADP-GGE 63

Query: 306 IRIKGKDYSPRSVKDAIAQGVFMSPKDRGTNAVIPAFDIADNMTLPFLQGMSVGSFLKSR 365
           IRI G+         A A G+ +  ++    ++ P   +A+N+ L   + +  G  +  +
Sbjct: 64  IRIAGQLIPTFDPATAKALGIAVIYQEL---SLCPNLSVAENIYLG--RELRRGWTIDRK 118

Query: 366 QQRGTAQGMVDRLGIVCQSVRDGIGTLSGGNQQKVMIARWLLEPAQVLLLDEPFQGVDIG 425
                   ++ RLG         + +LS   +Q V IAR L   A++L++DEP   +   
Sbjct: 119 GMEAGCIEVLQRLGAEFTPATR-VSSLSIAERQLVEIARALHAHAKILVMDEPTTPLSSR 177

Query: 426 ARRDIGHHIRAT-TQGRATLVFLAEIDEALEIADRIVVMSEGAIVGEHTNRNIDLAALVA 484
               +   I+   +QG A +     + E   ++DR+ V+ +G  +GE T   +   ALV 
Sbjct: 178 ETDRLFALIKQLRSQGLAIIYISHRMAEIYALSDRVSVLRDGHYIGELTRDALSAEALVK 237

Query: 485 DISG 488
            + G
Sbjct: 238 MMVG 241