Pairwise Alignments

Query, 498 a.a., ABC transporter related (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 500 a.a., L-arabinose transporter ATP-binding protein from Pseudomonas simiae WCS417

 Score =  287 bits (735), Expect = 5e-82
 Identities = 171/479 (35%), Positives = 266/479 (55%), Gaps = 8/479 (1%)

Query: 2   NGLQKSFGKNNVLRGIDLTLDPGSVTVLMGANGAGKSTLVKVICGQHRADGGTMRLATNA 61
           +G+ K+F     L GI  +  PG V  LMG NGAGKSTL+K++ G +  + GT+ +    
Sbjct: 9   DGIGKTFPGVKALDGISFSAHPGQVHALMGENGAGKSTLLKILGGAYIPNSGTLHIGEQV 68

Query: 62  FDPEDAADAIRQGVVTVHQSIDDGVIPDLDVANNLMLDRLAEHSHGLFVRERHLRTEAAK 121
              + AAD+I  GV  +HQ +   ++P++ VA NL L  L   S    V    LR +A  
Sbjct: 69  MAFKSAADSIASGVAVIHQELH--LVPEMSVAENLFLGHLP--SRFGVVNRGLLRKQALA 124

Query: 122 VAAAMGIEVNLRARVSDLSVADRQMIAIARAMARAPKVLILDEPTSSLSATEADRLFELI 181
               +  E++   ++  LS+  RQ++ IA+A++R   V+  DEPTSSLSA E DRL  +I
Sbjct: 125 CLKGLADEIDPAEKLGRLSLGQRQLVEIAKALSRGAHVIAFDEPTSSLSAREIDRLMAII 184

Query: 182 DRLRAQGVAILYISHRMSDIRRIADRIVVMRDGMISGVFE-TEPLDLEAAVTAMLGHRMT 240
            RLR +G  +LY+SHRM ++ RI + + V +DG     FE    L  +  VT M+G  + 
Sbjct: 185 ARLRDEGKVVLYVSHRMEEVFRICNAVTVFKDGRYVRTFEDMSALTHDQLVTCMVGRDIQ 244

Query: 241 EV-DAEVRQGTHPVLEIKNLQLFEGASPITLTAHDGEVVALVGLLGSGKSRLAEILFGIA 299
           ++ D   R+     L++  L       P++     GE++ L GL+G+G++ L  +L G+ 
Sbjct: 245 DIYDYRPREHGEVALKVDGLLGPGLREPVSFNVRKGEILGLFGLVGAGRTELFRLLSGLE 304

Query: 300 RPIRGSIRIKGKDYSPRSVKDAIAQGVFMSPKDRGTNAVIPAFDIADNMTLPFLQGMSV- 358
           R   G + + G+    +S +DAIA GV + P+DR    +IP   +A+N+ +      S  
Sbjct: 305 RASAGQLELCGEPLHLQSPRDAIAAGVLLCPEDRKKEGIIPLSSVAENINISARGAHSTF 364

Query: 359 GSFLKSRQQRGTAQGMVDRLGIVCQSVRDGIGTLSGGNQQKVMIARWLLEPAQVLLLDEP 418
           G  L+   ++G A   ++ + +   +    I  LSGGNQQK ++ RWL  P +VLLLDEP
Sbjct: 365 GWLLREGWEKGNADQQINAMKVKTPNAAQKIMYLSGGNQQKSILGRWLSMPMKVLLLDEP 424

Query: 419 FQGVDIGARRDIGHHI-RATTQGRATLVFLAEIDEALEIADRIVVMSEGAIVGEHTNRN 476
            +G+DIGA+ +I   I     QG A +V  +++ E + IADRI+V+ EGA+ GE T  +
Sbjct: 425 TRGIDIGAKAEIYQIIHNLAAQGIAVIVVSSDLMEVMGIADRILVLCEGALRGEQTREH 483