Pairwise Alignments

Query, 346 a.a., periplasmic binding protein/LacI transcriptional regulator (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 342 a.a., putative Ribose ABC transporter, periplasmic ribose-binding protein from Pseudomonas putida KT2440

 Score = 55.8 bits (133), Expect = 2e-12
 Identities = 84/337 (24%), Positives = 141/337 (41%), Gaps = 25/337 (7%)

Query: 2   LRRHFMAFASAASLALG----------AGAATAQEAPAPLDTPEEVTIALVRYLSTGDFF 51
           + R  +  AS+A LALG          AGA +  EA A + + +   IA +  + T  +F
Sbjct: 9   MSRRCLLGASSAMLALGLAAPLTRAMAAGADSGAEASATVPSLKGKRIA-ISTVGTSIYF 67

Query: 52  --QAYLSGVETQAAALGVNLRVFDSRQDAALQADMVDQAIALGVDGIIIQHGLTESMREA 109
             +A+ + VE      G  + +   R D A+   +    + L  D +I   G    +   
Sbjct: 68  DSRAFKAQVEEVQRLGGTPITLDAGRNDKAMVTQL-QNLVTLKPDAVIHTLGTLSIIEPW 126

Query: 110 AQRAVDAGIKVVAFDVNVENAAIPQVEQSDYLLGKLALEQAIKD-NGDSFAAGYVYVPGI 168
            +R   AGI +   +V  + A +  +   ++  G L  +Q + D  G      +    G+
Sbjct: 127 FKRISAAGIPLFTIEVPSQYA-VNTISADNWSTGLLLAKQLVADLRGKGRVLLFNGFYGV 185

Query: 169 APLDRRHAAWEEVKTANPGIT---EEARIGTLDNPIANANANQARAALQANPN--ISVFF 223
                R+   + V    P I     E R   + N + +A + Q  A L   P   +   +
Sbjct: 186 PSCGIRYDQLKLVSKFYPQIEFIQPELR-DVIPNTVQDARS-QVAALLNKYPKGELDAIW 243

Query: 224 APYNEFAKGVKIAADELGLSGEMSIYSADISTADIALMREPGSAWKATVATNPAVVGEVS 283
           A ++    G   A  E G + E+  Y  D +   + L+R+PGS   A VA  PA++G  +
Sbjct: 244 AAWDLPQLGASQALIEAGRN-EVRTYGVDGTPEVLELLRQPGSPVAAVVAQQPALIGRTA 302

Query: 284 VRALALMLAGEDPGASVIVPPTLITQAFLNDNDIRNM 320
           V  +A  LAGE          TL+T A  N +D++ +
Sbjct: 303 VHNVARYLAGEHDLPPETFVETLLTTAG-NVDDVKRI 338