Pairwise Alignments

Query, 299 a.a., histidine kinase (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 1682 a.a., Sensor histidine kinase/GAF domain protein from Pseudomonas putida KT2440

 Score =  144 bits (362), Expect = 2e-38
 Identities = 85/226 (37%), Positives = 129/226 (57%), Gaps = 3/226 (1%)

Query: 56   RRRAAAELAQQRAEVARLSRVSQLGELSGAIAHELKQPLTSILMNAESGRALLRQSPPDL 115
            R +  AEL + RAE+AR + +  + ELS +IAHE+ QPL  I  NA +    L+++ PDL
Sbjct: 1439 RTQMEAELRRSRAELARSAHLQAMNELSASIAHEISQPLLGIASNAAASLRWLKRAKPDL 1498

Query: 116  REIAEILEDIANDDRRAAGVIDNLRKLLGEGAPDFQPVELNDVVRATLRLIRSELIARSV 175
             E    LEDI ND  RA  ++  LR L  +     + V+L++++R  +RL  ++     V
Sbjct: 1499 EEAIAGLEDIRNDSERAGNIVRALRSLAKQSPMQLKAVKLDELIREVVRLTSADAAKGKV 1558

Query: 176  RTDLKLCEAALIATGNAEQLQQVLLNLIFNATDGMADQPRKTRRISIETTLRTDGMREVS 235
                +L +A +  T +  QLQQ++ NLI NA + +A   R    + I + +  D + E+ 
Sbjct: 1559 DVQTRL-KAGVCVTADPVQLQQLVFNLITNALEALAGY-RCDGVLKITSAVVEDEV-EIC 1615

Query: 236  VTDTGPGLPEAVRDAAFQPFVTTKAHGMGLGLSISRTIAEAHGGQL 281
            V D GPG+    R+  F  F TTK  GMG+GL+I  ++A+AHGGQL
Sbjct: 1616 VDDNGPGIAADERERVFDAFHTTKTGGMGMGLAICSSVAQAHGGQL 1661