Pairwise Alignments

Query, 273 a.a., Integrase catalytic region (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 309 a.a., IS3 family transposase from Agrobacterium fabrum C58

 Score =  314 bits (805), Expect = 1e-90
 Identities = 154/250 (61%), Positives = 187/250 (74%)

Query: 9   GYNQRRACALAGIDPRVYRRRSKRLADTELRVRMKELASERRRFGYRRLHMLLKREGWEV 68
           G ++RRAC +   D ++ R RS R  + ELR+R+++LA+ERRRFGYRRL +LL+R+G   
Sbjct: 19  GLSERRACQIISADRKMIRYRSCRPPEVELRLRLRDLANERRRFGYRRLFILLRRDGEPS 78

Query: 69  NWKKLYRLYRDEGLTVRKRGGRKRAVGTRTPMAIPQGPNQRWSLDFMSDALEDGRRFRVL 128
              ++YRLYR+EGL+VRKR  R+RAVGTR P+ +    N RWSLDF+ D    GRRFRVL
Sbjct: 79  GVNRIYRLYREEGLSVRKRKARRRAVGTRAPILVEAKANARWSLDFVHDQFACGRRFRVL 138

Query: 129 NVIDDFSRECLAAVVDTSISGARVARELDRIAELRGYPCLVVSDNGTELTSNAMLKWQED 188
           N++DD +RECLAA+ DTSISG RVAREL  +   RG P ++VSDNGTELTSNA+L W +D
Sbjct: 139 NIVDDVTRECLAAIPDTSISGRRVARELTALIPRRGKPGVIVSDNGTELTSNAILAWSKD 198

Query: 189 RKVDWHYIAPGKPMQNGLVESFNGRMREECLNEHLFPSLRHACRMIAAWRDDYNHHRPHS 248
            KVDWHYIAPG+PMQNG VESFNGRMR+E LNE LF  L HA   IA W DDYNH RPHS
Sbjct: 199 HKVDWHYIAPGRPMQNGYVESFNGRMRDELLNESLFFGLDHARSAIAEWADDYNHFRPHS 258

Query: 249 SLDGLTPREY 258
           SL   TP  Y
Sbjct: 259 SLGYQTPAAY 268