Pairwise Alignments

Query, 227 a.a., two component transcriptional regulator, winged helix family (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 226 a.a., DNA-binding response regulator from Pseudomonas putida KT2440

 Score =  113 bits (283), Expect = 3e-30
 Identities = 72/221 (32%), Positives = 109/221 (49%), Gaps = 6/221 (2%)

Query: 4   RLLIVEDDPEITSALVRGLALHGYEAEAENRADRALSRLTAGIYSGAIVDVMLGSDSGVE 63
           R+L +EDD      +V  L  HG E +  +     L++  AG Y    +D ML    G+ 
Sbjct: 3   RVLTIEDDAVTGQEIVAELTSHGLEVDWADNGREGLAKAIAGGYDLITLDRMLPEVDGLT 62

Query: 64  LVRTARAHGATLPILMLSALSGVEDRATGLAAGADDYVVKPFHFDELVARLRVQEHR--- 120
           +V T R      PILM+SALS V++R  GL AG DDY+ KPF  DE+ AR+ V   R   
Sbjct: 63  IVTTLRNLKIATPILMISALSDVDERVRGLRAGGDDYLTKPFASDEMAARVEVLLRRNSV 122

Query: 121 ---ALAQRVSPARLIRTSRRLEMGPDSVTLTEREFDLLALLIRSGEDPQPRSQLHATLWA 177
                  +V+  +L   S     G +++ L   E+ LL  L+R       R  +   +W 
Sbjct: 123 PTTQTRLQVADLQLDLISHEARRGDNTLNLLPTEYKLLEYLMRHSGQVITRMMIFEEVWG 182

Query: 178 AEGASTENVVDVYVGYLRRKLETADFGFEIKTVRNRGFCIS 218
                  N++DV++G LR+K+++      I+TVR  G+ I+
Sbjct: 183 YHFDPGTNLIDVHIGRLRKKIDSPGQSPLIRTVRGSGYAIA 223