Pairwise Alignments

Query, 227 a.a., two component transcriptional regulator, winged helix family (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 226 a.a., Transcriptional activator protein CopR from Alteromonas macleodii MIT1002

 Score =  115 bits (289), Expect = 5e-31
 Identities = 74/222 (33%), Positives = 114/222 (51%), Gaps = 8/222 (3%)

Query: 4   RLLIVEDDPEITSALVRGLALHGYEAEAENRADRALSRLTAGIYSGAIVDVMLGSDSGVE 63
           ++L+VEDDP++ S +  GL   G+E            + ++      I+DVML    G  
Sbjct: 2   KVLLVEDDPKVASHIANGLLGEGHECITVGDGTSGYQQASSNELDAVILDVMLPELDGFS 61

Query: 64  LVRTARAHGATLPILMLSALSGVEDRATGLAAGADDYVVKPFHFDELVARL-------RV 116
           ++   R  G T P+L+LSA S VED+  GL  GA+DY+ KPF F+EL+AR+       + 
Sbjct: 62  VLEKLREEGNTTPVLLLSAKSQVEDKVKGLRTGANDYLTKPFAFEELLARVEGLAGRNKE 121

Query: 117 QEHRALAQRVSPARLIRTSRRLEMGPDSVTLTEREFDLLALLIRSGEDPQPRSQLHATLW 176
            E + L  +V    L   +R++  G   + L  +EF LL  L+R       RS L   +W
Sbjct: 122 GEDKTLI-KVGDLTLDLVNRKVLRGDQEIDLQSKEFQLLECLLRHKGKVVTRSMLLEQVW 180

Query: 177 AAEGASTENVVDVYVGYLRRKLETADFGFEIKTVRNRGFCIS 218
                   NV+DV++  LR+K++ A     I+TVR  G+ I+
Sbjct: 181 NYHFDPQTNVIDVHISRLRQKVDKAFNVPLIETVRGTGYRIA 222