Pairwise Alignments

Query, 536 a.a., integral membrane sensor signal transduction histidine kinase (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 917 a.a., Sensor protein GacS from Pseudomonas putida KT2440

 Score =  103 bits (258), Expect = 2e-26
 Identities = 103/383 (26%), Positives = 173/383 (45%), Gaps = 39/383 (10%)

Query: 144 RGLLTDT--QDTERLRGYIDSFATSFDPLLGQAINTERLFRSEILSGIEALRIQLAWMAL 201
           R L TD    + ERL G+++   +    LL    N   LF S +L         LA +AL
Sbjct: 135 RDLATDAVPAEAERLLGWVEIELSHDGTLLRGYRN---LFTSLLLI--------LACLAL 183

Query: 202 GIALAAGLSVAAFYFGLVRPQFYRLDAVRSAADQIGRGDFSGVLPVSRLDEIGQLSQQTN 261
              LA  +S         R     ++ ++ A +Q+  G     LP     E+ +L+   N
Sbjct: 184 SGLLALRMS---------RTINDPIERIKHAVNQLKDGHLEERLPTMGSHELDELAHGIN 234

Query: 262 RMAAALSDRQAKVDAEWTQLNEIIATRTKELKQANARLEKTDED-------RRRFFADVS 314
           RMA  L +   ++     Q  E +    + ++  N  L+   ++       +  F A++S
Sbjct: 235 RMAETLQNAHEELQHSIDQATEDVRQNLETIEIQNIELDMARKEALEASRIKSEFLANMS 294

Query: 315 HELRTPLTVILMEAQIGRQS--IPAAADAFATIEARAERLNRKIDDLLRLARSETGQLAL 372
           HE+RTPL  IL    + ++S   P   D   TIE  A+ L   I+++L  ++ E G+L L
Sbjct: 295 HEIRTPLNGILGFTHLLQKSEMTPRQLDYLNTIEKSADNLLGIINEILDFSKIEAGKLVL 354

Query: 373 ACVPVALDALVASAIEEVQAELDNAGMTLDLVPFRET--QVRADPDWLRQVLVSLVRNAI 430
             +P  L  L+   +  +        + L  + +R+T   +  DP  L+Q+L +LV NAI
Sbjct: 355 DSIPFNLRDLIQDTLTILAPAAHAKQLELLSLIYRDTPASLVGDPLRLKQILTNLVSNAI 414

Query: 431 RHARSGEKLRIAPVVQR----TQAGVSITDNGPGIPASRQYQVFERFSQGAGATSAQ--G 484
           +  R G  +  A +        Q  +S+ D G G+       +F+ FSQ   + + Q  G
Sbjct: 415 KFTREGTIVVRAMLEDEHEDCAQLRISVQDTGIGLSPQDVRTLFQAFSQADNSLARQPGG 474

Query: 485 FGIGLALARWVIDAHGGEISLQS 507
            G+GL +++ +I+  GGEI + S
Sbjct: 475 TGLGLVISKRLIEQMGGEIGVDS 497