Pairwise Alignments

Query, 269 a.a., Integrase catalytic region (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 286 a.a., transposase from Agrobacterium fabrum C58

 Score = 80.1 bits (196), Expect = 5e-20
 Identities = 80/278 (28%), Positives = 126/278 (45%), Gaps = 21/278 (7%)

Query: 1   MAHVVEVHGVSQRRAGKALAVDRSSVRYRSVRPDDAEARAAMKAVAAERRRFGYRRI-HV 59
           +A + E  GVS  R+G     +RS   +   R D+       ++  +  R +G RR+ H 
Sbjct: 15  VAWLCEALGVS--RSGFHAWFNRSPSEH--ARHDEVLLERIKQSFQSSDRTYGARRVWHD 70

Query: 60  MLERQGIMMNLKKLRRLYREEKLQVR-RRGGRKRALGTRWPMLVP---------DAPNQH 109
           +LE +G+   L ++ RL R   L+ R RR G  +  G R P+++P         D PNQ 
Sbjct: 71  VLE-EGLSCGLHRIERLMRLNALRARPRRRGFPKDAGDR-PVVMPNVLDRQFVADRPNQK 128

Query: 110 WSLDFVSDALTDGRQFRVLAVVDDYSRECLALVADTSLSGLRVVRELDALMLRRGQPAMV 169
           W  DF      +G  + V AV+D +SR  +    + +++   V   L   + RRG+P  +
Sbjct: 129 WVADFTYIWTAEGWLY-VAAVIDLFSRRVVGWSMNANMTAQLVTDALIMAIWRRGKPDAL 187

Query: 170 V--SDNGTELTSVAVLSWCQRTGIEWHYIAPGKPMQNGFVESFNGRFRDELLNESLFSSL 227
           +  SD G++ TS          GI       G    N  +ESF    + E     ++ + 
Sbjct: 188 LHHSDQGSQYTSEQFQRLMGDHGITCSMSRSGNVWDNAAMESFFSSLKTERTARKVYRTR 247

Query: 228 ADAREQIRAW-QHDYNHHRPHSGLGNIPPVEFVAKKGL 264
            DAR  +  + +  YN  R HS LG + P +F  K GL
Sbjct: 248 NDARADVFDYIERFYNPKRRHSTLGYLSPDDFETKVGL 285