Pairwise Alignments

Query, 358 a.a., inner-membrane translocator (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 346 a.a., ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

 Score =  196 bits (499), Expect = 6e-55
 Identities = 123/304 (40%), Positives = 170/304 (55%), Gaps = 17/304 (5%)

Query: 58  IWAIAAIGLNILTGYCGQVSLGTGGFMAVGAYACYKLMTAFPDLNIAICVLLGGVITAAV 117
           I  IAA+GLN+ TG  G +SL  G F+ VG Y    L        IA+ V   G + A +
Sbjct: 53  IHVIAALGLNLTTGNAGLISLSHGAFIGVGCYTVAWLGKQGVPFYIALPV--AGFVAAFL 110

Query: 118 GVLFGLPSLRIKGFYLAVATLAAQFFLVWLFNKVPWFYNYSASGQINAPERTMFGYAITG 177
           GV+ GLPSLR+KG YLA+ATLAA F L + F +  W          + P   +FG+ + G
Sbjct: 111 GVIVGLPSLRVKGLYLAIATLAAHFILSFAFRE--WDAVTGGVSGTSIPRANLFGFELVG 168

Query: 178 PNADAAPKYLFCLAFL--FVLAWLARNLTRGTIGRSWMAIRDMDIAAEIIGVNPLKAKLT 235
              +      F L F+  F +A  ARNL R  IGR+++A+RD DI+AEI+GV+ L+ KLT
Sbjct: 169 DRRN------FYLIFVCAFAMAVAARNLARTHIGRAFVAVRDRDISAEILGVHLLRTKLT 222

Query: 236 AFAVSSFFVGVAGALFFSVYLGAVEVGEAFGINQSFLVLFMIIIGGLGSIFGSLAGAAFI 295
           AFA+ +F+ GVAG L    + G++   + F +  S   L  +I+GGLG++ GS+ GA F+
Sbjct: 223 AFAIGAFYAGVAGGL-LGYFYGSI-TPDYFVLTLSVFYLAAVIVGGLGTVLGSVLGAVFM 280

Query: 296 VLLPV---LLKNVMVGSLGWDTAIAAHFEFVVLGGLIIFFLIVEPHGLARLWQLAKEKLR 352
             +P    LL +V   +      +      VV G LII FLI EPHGLA +W   +    
Sbjct: 281 TFVPEGLRLLASVSSQAFPGVAGLLLPMGQVVFGLLIIVFLIFEPHGLAAIWARVRRSFH 340

Query: 353 LWPF 356
           LWPF
Sbjct: 341 LWPF 344