Pairwise Alignments

Query, 358 a.a., inner-membrane translocator (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 329 a.a., putative Branched-chain amino acid ABC transporter, permease protein from Pseudomonas putida KT2440

 Score =  312 bits (799), Expect = 9e-90
 Identities = 172/358 (48%), Positives = 220/358 (61%), Gaps = 35/358 (9%)

Query: 1   MFYREAGDFKTSYVADSQTFPIAFDRMRYYLVLAVAVGIIPFVINDYWASAVMVPFLIWA 60
           M YREAG F   Y  D + F +  DR+    ++  A   +P + NDYW SA+++PFL+ +
Sbjct: 1   MLYREAGQFSVRYADDRRFFRLRQDRLGLAALVLFAFIGVPLLGNDYWFSAILIPFLLLS 60

Query: 61  IAAIGLNILTGYCGQVSLGTGGFMAVGAYACYKLMTAFPDLNIAICVLLGGVITAAVGVL 120
           +A +GLN+LTGY GQ+SLG+  FMAVGA+A Y        L +   +LLGG++ A V V+
Sbjct: 61  LAGLGLNLLTGYAGQLSLGSAAFMAVGAFAAYNFELRVAWLPLLASLLLGGLVAALVAVV 120

Query: 121 FGLPSLRIKGFYLAVATLAAQFFLVWLFNKVPWFYNYSASGQINAPERTMFGYAITGPNA 180
           FGLPSLRIKGFYL V+TLAAQFF+ W   +  WF N SASG I+A               
Sbjct: 121 FGLPSLRIKGFYLLVSTLAAQFFVPWALTRFSWFSNDSASGVISA--------------- 165

Query: 181 DAAPKYLFCLAFLFVLAWLARNLTRGTIGRSWMAIRDMDIAAEIIGVNPLKAKLTAFAVS 240
                          L WL  NL R  +GR+WMA+RDMD AA +IG+  LK KL AFA+S
Sbjct: 166 ---------------LFWLGANLVRSELGRNWMAVRDMDTAAAVIGIPLLKTKLLAFAIS 210

Query: 241 SFFVGVAGALFFSVYLGAVEVGEAFGINQSFLVLFMIIIGGLGSIFGSLAGAAFIVLLPV 300
            F++GVAG+L+   YLG VE    F +N+SF +LF+IIIGGLGSI G+  GAAFIVL PV
Sbjct: 211 GFYLGVAGSLWAFTYLGTVE-PHGFDLNRSFQILFIIIIGGLGSILGNFLGAAFIVLFPV 269

Query: 301 LLKNVMVGSLGW---DTAIAAHFEFVVLGGLIIFFLIVEPHGLARLWQLAKEKLRLWP 355
           LL N + G L     D     + + +  G LII FLI EP GLARLWQ  +E+ R WP
Sbjct: 270 LLSN-LAGLLPTGLIDAGQIENLQKIAFGTLIIIFLIKEPEGLARLWQRFRERARRWP 326