Pairwise Alignments

Query, 358 a.a., inner-membrane translocator (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 418 a.a., branched chain amino acid transporter - permease subunit from Pseudomonas putida KT2440

 Score =  144 bits (362), Expect = 6e-39
 Identities = 97/332 (29%), Positives = 164/332 (49%), Gaps = 36/332 (10%)

Query: 28  RYYLVLAVAVGIIPFVINDYWASAVMVPFLIWAIAAIGLNILTGYCGQVSLGTGGFMAVG 87
           RY ++  + V ++        A  +    LI+ +  +GLNI+ G  G + LG  GF AVG
Sbjct: 92  RYVIIGLIVVALVWPFFGSRGAVDIATLILIYVLLGLGLNIVVGLAGLLDLGYVGFYAVG 151

Query: 88  AYACYKLMTAFPDLNIAICVLLGGVITAAVGVLFGLPSLRIKGFYLAVATLA-AQFFLVW 146
           AY+ Y +++ +   +  +C+ + G++ A  G L G P LR++G YLA+ TL   +   ++
Sbjct: 152 AYS-YAMLSHYLGWSFWVCLPIAGLMAATFGFLLGFPVLRLRGDYLAIVTLGFGEIIRLF 210

Query: 147 LFNKVPWFYNYSASGQINAPERTMFG--------------YAITGPNADAAPKYLFCLAF 192
           L N   W      +G  N P+   FG              +   G   ++  K +F    
Sbjct: 211 LRNLTDW--TGGPNGISNIPKPEFFGLTFERRAAEGMQTFHEFFGLQYNSINKVIFLYLV 268

Query: 193 LFVLAWLA----RNLTRGTIGRSWMAIRDMDIAAEIIGVNPLKAKLTAFAVSSFFVGVAG 248
             +LA LA      L R  IGR+W A+R+ +IA   +G+NP   KL+AF + + F G AG
Sbjct: 269 ALLLALLALFVINRLLRMPIGRAWEALREDEIACRALGLNPTVIKLSAFTLGACFAGFAG 328

Query: 249 ALFFSVYLGAVEVGEAFGINQSFLVLFMIIIGGLGSIFGSLAGAAFIVLLPVLLKNVMVG 308
           + FF+   G V   E+F   +S ++L ++++GG+GS  G +  A  ++LLP L++     
Sbjct: 329 S-FFAARQGLV-TPESFTFIESAIILAIVVLGGMGSQLGVILAAIVMILLPELMREF--- 383

Query: 309 SLGWDTAIAAHFEFVVLGGLIIFFLIVEPHGL 340
                    + +  ++ G L++  +I  P GL
Sbjct: 384 ---------SEYRMLMFGALMVLMMIWRPQGL 406