Pairwise Alignments

Query, 358 a.a., inner-membrane translocator (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 330 a.a., Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  212 bits (540), Expect = 1e-59
 Identities = 131/336 (38%), Positives = 193/336 (57%), Gaps = 24/336 (7%)

Query: 31  LVLAVAVGIIPFVINDYWASAVMVPFLIWAIAAIGLNILTGYCGQVSLGTGGFMAVGAY- 89
           L+LA A+   PF ++    S  ++P+L+W  A +GLN++ G+ GQ   G    M +GAY 
Sbjct: 4   LLLAFAL-TAPFTMSTLVLSTQLLPWLVWTAAVLGLNLILGWTGQFHFGYAAIMGIGAYT 62

Query: 90  ACYKLMTAFPDLNIAICVLLGGVITAAVGVLFGLPSLRIKGFYLAVATLAAQFFLVWLFN 149
           A + +    P     I ++LGGV+ A +G++F   +LR+KG YLA++TLA QF + W+ +
Sbjct: 63  AVHGVRNGIP---WEIAMVLGGVMAAVIGIVFAFAALRVKGLYLALSTLALQFVMDWVIS 119

Query: 150 KVPWFYNYSASGQINAPERTMFGYAITGPNADAAPKYLFCLAFLFVLAWLARNLTRGTIG 209
            VP   +      + AP+ ++ G AIT         Y   L +  ++     NL R  +G
Sbjct: 120 HVP-AISGGTQATLQAPDISLLGQAITSDTG----LYYVALGWCLIVTVFMLNLRRTGLG 174

Query: 210 RSWMAIRDMDIAAEIIGVNPLKAKLTAFAVSSFFVGVAGA-LFFSVYLGAVEVGEAFGIN 268
           R+ +A+R+ D AA +IGV+ L  KL AFA SSF  G++GA L F+ Y  A    E F +N
Sbjct: 175 RALIAVREKDFAAAVIGVHSLYYKLVAFATSSFIGGISGAILIFTFYRAATP--EQFAVN 232

Query: 269 QSFLVLFMIIIGGLGSIFGSLAGAAFIVLLPVLLKNVMVG--------SLGWDTAIAAHF 320
            S  +L M+I+GGLGSI GS  GAAFI+L+P L+ N ++G        SLG +T   AH 
Sbjct: 233 VSIELLAMVIVGGLGSIIGSYFGAAFILLMPGLM-NSLIGWLAQLLGISLGIET--LAHI 289

Query: 321 EFVVLGGLIIFFLIVEPHGLARLWQLAKEKLRLWPF 356
              V G LII FL+VEP GL +++   +  L +WPF
Sbjct: 290 PHAVYGALIIIFLLVEPMGLGKMYTNLRNYLLVWPF 325