Pairwise Alignments

Query, 358 a.a., inner-membrane translocator (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 348 a.a., Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  182 bits (463), Expect = 9e-51
 Identities = 128/361 (35%), Positives = 200/361 (55%), Gaps = 27/361 (7%)

Query: 6   AGDFKTSY---VADSQTFPIAFDRMRYYLVLAVAVGIIPFVINDYWASAVMVPFLIWAIA 62
           +G+FK +Y   +A + + P+         +LA A    P ++  Y+ S +++  LI A+ 
Sbjct: 3   SGNFKQNYRQLLALTDSVPVIVWSCLLVALLAAA----PLLLAKYYVSVILL-LLITAVG 57

Query: 63  AIGLNILTGYCGQVSLGTGGFMAVGAYACYKLMTAFPDLNIAICVLLGGVITAAVGVLFG 122
            +GLN+LTG  G +SLG  GF+AVGAY    ++ +     +   +  GGV  A  G++ G
Sbjct: 58  VLGLNLLTGTTGLISLGHSGFLAVGAYTA-GIVASKLGWPMLASIFAGGVSAAIAGIIVG 116

Query: 123 LPSLRIKGFYLAVATLAAQFFLVWLFNKVPWFYNYSASGQ-INAPERTMFGYAITGPNAD 181
           +PSLR+KG YLA+ T+A   F V + + +    + +   + +  P+ ++FG A+      
Sbjct: 117 IPSLRLKGLYLAITTMA---FAVIINHLILNGGDLTGGSEGLTVPQPSLFGQALGAERG- 172

Query: 182 AAPKYLFCLAFLFVLAWLARNLTRGTIGRSWMAIRDMDIAAEIIGVNPLKAKLTAFAVSS 241
               Y   L F+ V  ++  N+ R  IGR++ AIR+ DIAA+ +GVN ++ KL AF VS+
Sbjct: 173 ---YYYVVLCFVVVFTFITLNILRSRIGRAFQAIREHDIAAKAMGVNLVRYKLLAFMVSA 229

Query: 242 FFVGVAGAL--FFSVYLGAVEVGEAFGINQSFLVLFMIIIGGLGSIFGSLAGAAFIVLLP 299
           F+ G+AG L  +++ YL      ++F +  S   L M+I+GGLGS+ G+L G AFIVLL 
Sbjct: 230 FYTGIAGGLLAYYTRYLNV----DSFSLLISIEALSMLIVGGLGSVAGALLGTAFIVLLN 285

Query: 300 VLLKNV--MVG-SLGWDTAIAAH-FEFVVLGGLIIFFLIVEPHGLARLWQLAKEKLRLWP 355
             L  V  M+G S G   + AA+  + V+ G  I+ FL  EP GL   W+  K     WP
Sbjct: 286 ESLGFVFGMIGASFGGSGSTAAYEIKGVIYGLAIVLFLRFEPDGLMGRWRDIKHYWTHWP 345

Query: 356 F 356
           F
Sbjct: 346 F 346