Pairwise Alignments

Query, 358 a.a., inner-membrane translocator (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 350 a.a., Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  170 bits (431), Expect = 5e-47
 Identities = 130/367 (35%), Positives = 193/367 (52%), Gaps = 34/367 (9%)

Query: 6   AGDFKTSYVADSQTFPIAFDRMR-YYLVLAVAVGIIPFVINDYWASAVMVP----FLIWA 60
           +G F TSY  D      A  R R  ++ L + + I+ F+   ++ASA +V      L+ +
Sbjct: 4   SGIFSTSYARDR-----ALIRTRAQWVTLGLFIAILLFL--PWFASARLVAVANLMLVTS 56

Query: 61  IAAIGLNILTGYCGQVSLGTGGFMAVGAYACYKLMTAFPDLNIAICVLLGGVITAAVGVL 120
           I  +GL I TGY GQ++LG   FM VGAYA   ++     L   + V + G++ A  G L
Sbjct: 57  IVVVGLQITTGYAGQINLGQAAFMGVGAYAA-SVVEVKAGLPFWVAVPVAGLVAALAGWL 115

Query: 121 FGLPSLRIKGFYLAVATLAAQFFLVWLFNKVPWFYNYSASGQINAPERTMFGYAITGPNA 180
           FG+ + RIKGFYLA+ T+AAQF   ++   +P  +    +G    P R   G  +   N 
Sbjct: 116 FGMTAARIKGFYLALTTIAAQFIFHFIVLNLPSAWLGGVNGFSLEPAR--MGTFLF--NT 171

Query: 181 DAAPKYLFCLAFLFVLAWLARNLTRGTIGRSWMAIRDMDIAAEIIGVNPLKAKLTAFAVS 240
           D +  YLF L    V+   A  + R   GR+++A+RD D+AA ++GV+   AK  AF + 
Sbjct: 172 DRSLYYLF-LVVTMVMVIGAFGILRSRHGRAFVAVRDDDVAAGMMGVDVAGAKSRAFVLG 230

Query: 241 SFFVGVAGALF-FSVYLGAVEVGEAFGINQSFLVLFMIIIGGLGSIFGSLAGAAFI---- 295
           +F+ G+ GAL+ + V   +V   + F +  S   + M+I+GGLGSI G+L G   I    
Sbjct: 231 AFYAGIGGALWAYQVRFVSV---DQFTLFNSIWFIAMMIVGGLGSIVGALIGTVLIRGVQ 287

Query: 296 ----VLLPVLLKNVMVGSLGWDTAIAAHFEFVVLGGLIIFFLIVEPHGLARLWQLAKEKL 351
                L P L++   + SL  D   A+   F  LG +I  FL++EP GL   W + K   
Sbjct: 288 ETITSLGPDLVER--IPSLSSDLIFASMNVF--LGLIITLFLLLEPKGLMHRWNILKTNY 343

Query: 352 RLWPFPH 358
           RLWPF H
Sbjct: 344 RLWPFHH 350