Pairwise Alignments

Query, 358 a.a., inner-membrane translocator (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 348 a.a., Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  171 bits (432), Expect = 3e-47
 Identities = 121/328 (36%), Positives = 173/328 (52%), Gaps = 14/328 (4%)

Query: 32  VLAVAVGIIPFVINDYWASAVMVPFLIWAIAAIGLNILTGYCGQVSLGTGGFMAVGAYAC 91
           VL VA+   PF++ ++  S V +  L   I  +GL +LTG+ G +SLG  GF+ +GAY+ 
Sbjct: 28  VLMVALVAAPFLLGNFALSHVTI-ILFTLIGVLGLTVLTGFAGLISLGHVGFLMLGAYS- 85

Query: 92  YKLMTAFPDLNIAICVLLGGVITAAVGVLFGLPSLRIKGFYLAVATLAAQFFLVWLFNKV 151
           Y +      L   + +L   V+ A  G+L GLPSLR+ G YLA+ TLA    +       
Sbjct: 86  YAIGVTRLGLPPELALLAAAVVPAFFGLLVGLPSLRLHGLYLAITTLAFSHIVATAILAG 145

Query: 152 PWFYNYSASGQINAPERTMFGYAITGPNADAAPKYLFCLAFLFVLAWLARNLTRGTIGRS 211
             F        +  P  TMFG+ ++   A     Y FCL    +   +  NL R  +GR+
Sbjct: 146 GKFTGAGRGIMVMRP--TMFGFDLSSDRAF----YWFCLVMCTLAVLVTLNLRRSVLGRA 199

Query: 212 WMAIRDMDIAAEIIGVNPLKAKLTAFAVSSFFVGVAGALFFSVYLGAVEVGEAFGINQSF 271
            +A+RD DIAA  +G+N ++ KL AF +S+   GVAGA+   +YL  V V EAF    S 
Sbjct: 200 LVALRDNDIAARTMGINLVRYKLLAFLISAALTGVAGAI-MGMYLSIVSV-EAFPFLLSI 257

Query: 272 LVLFMIIIGGLGSIFGSLAGAAFIVLLPVL---LKNVMVGSLGWDTAIAAHFEFVVLGGL 328
             L +II+GGLGS+ G++ G  FIV LP +   L +++ G L      +AH    VL GL
Sbjct: 258 EALAIIIVGGLGSVLGAVLGTVFIVTLPEVFSSLVHLLGGRLQDVMTTSAHEVKSVLYGL 317

Query: 329 -IIFFLIVEPHGLARLWQLAKEKLRLWP 355
            II FL  +P GL  +W   +     WP
Sbjct: 318 AIIGFLRFDPRGLRGIWHDFRHTWVYWP 345