Pairwise Alignments

Query, 358 a.a., inner-membrane translocator (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 361 a.a., Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  167 bits (422), Expect = 5e-46
 Identities = 119/354 (33%), Positives = 189/354 (53%), Gaps = 22/354 (6%)

Query: 9   FKTSYVADSQTFPIAFDRMRYYLVLAVAVGIIPFVINDYWASAVMVPFLIWAIAAIGLNI 68
           FKTSY  D         R  Y L+L VA+   P+++ DYW + +   F I+AI A+GL +
Sbjct: 5   FKTSYDQDIHLVRHEGQRFWYGLLL-VALLAAPWLLPDYWLAQLTFVF-IYAIVAVGLML 62

Query: 69  LTGYCGQVSLGTGGFMAVGAYACYKLMTAFPDLNIAICVLLGGVITAAVGVLFGLPSLRI 128
           L G+ GQ S+G   FM VGAY    L        +++   +G  ++AAVGV+ GLP+LR+
Sbjct: 63  LAGFTGQFSIGHAAFMGVGAYTEAWLAARGWPFPVSLACAMG--LSAAVGVIVGLPALRV 120

Query: 129 KGFYLAVATLAAQFFLVWLFNKVPWFYNYSASGQINAPERTMFGYAITGPNADAAPKYLF 188
           KG YL +ATL+  F +  +  +  W      S   +     +FG+      +     Y  
Sbjct: 121 KGMYLGIATLSFGFIVEEVLAR--WESVTGGSAGQSVKPMALFGWTFDSDRSF----YFV 174

Query: 189 CLAFL--FVLAWLA-RNLTRGTIGRSWMAIRDMDIAAEIIGVNPLKAKLTAFAVSSFFVG 245
           CL  L   VL+ LA  NL R   GR+++AIRD +++A+ +G++  + K  +F +S+   G
Sbjct: 175 CLVCLVCMVLSTLAVLNLLRAPTGRAFVAIRDSEVSAQSMGIHLARYKSLSFGISAALAG 234

Query: 246 VAGALFFSVYLGAVEVGEAFGINQSFLVLFMIIIGGLGSIFGSLAGAAFIVLLP---VLL 302
           + GAL+   +       + F + QS  +L M++IGGLGS+ G+  GA F++  P    L 
Sbjct: 235 LGGALY--AHKMTFISPDQFNLVQSIDLLLMVVIGGLGSMHGAFFGAIFLIGAPQVIALF 292

Query: 303 KNVMVGSLGWDTAIAAHFEFVVLGGLIIFFLIVEPHGLARLWQLAKEKLRLWPF 356
           K+++  ++G  T + A    VV G ++I F++ EP G+   W   +  L L+PF
Sbjct: 293 KDLLPPAIGQATGLQA----VVYGLVLIAFVMFEPMGIHGRWLKIRTWLELYPF 342