Pairwise Alignments

Query, 358 a.a., inner-membrane translocator (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 358 a.a., Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  169 bits (427), Expect = 1e-46
 Identities = 109/332 (32%), Positives = 187/332 (56%), Gaps = 20/332 (6%)

Query: 29  YYLVLAVAVGIIPFVINDYWASAVMVPFLIWAIAAIGLNILTGYCGQVSLGTGGFMAVGA 88
           +Y +L + + + P+ + +YW  A +   LI+A+  +GL +L G+ G  SLG   F+ VGA
Sbjct: 24  WYSLLGLFLVVAPWALPEYWL-AQLTFVLIYAVVGLGLMLLAGFTGLFSLGHAAFLGVGA 82

Query: 89  YACYKLMTAFPDLNIAICVLLGGVITAAVGVLFGLPSLRIKGFYLAVATLAAQFFLVWLF 148
           Y    ++ A   +   + +   G+++AAVG++ GLP+LR+KG YL +ATLA  F +  + 
Sbjct: 83  YTQAIMVNA--GIPFPLALACAGLLSAAVGMVVGLPALRVKGIYLGMATLAFGFIVEEVI 140

Query: 149 NKVPWFYNYSASGQINAPERTMFGYAITGPNADAAPKYLFCLAFLFVLAWLAR-NLTRGT 207
            +  W +    +  +     T+FG+A+     D+  ++ F    + VLA L   NL R +
Sbjct: 141 AR--WEHVTGGNAGLMVQYPTLFGWAL-----DSTDEFYFLCLVVTVLATLGIVNLMRSS 193

Query: 208 IGRSWMAIRDMDIAAEIIGVNPLKAKLTAFAVSSFFVGVAGALFFSVYLGAVEVGEAFGI 267
            GR+++AIRD +I+A+ +G+   + K  +FA+S+   G+ GAL+   +       E F I
Sbjct: 194 TGRAFVAIRDSEISAQSMGIQLARYKTLSFALSAALAGIGGALY--AHKIQFLSPEQFSI 251

Query: 268 NQSFLVLFMIIIGGLGSIFGSLAGAAFIVLLPVLL---KNVMVGSLGWDTAIAAHFEFVV 324
            QS  +L M++IGGLGSI G+  GA F++++P L+   K+ +  ++G     AA  +  V
Sbjct: 252 IQSIDLLLMVVIGGLGSIHGAFLGAIFLIVMPQLISLGKDFLPEAIGQ----AAGLQGAV 307

Query: 325 LGGLIIFFLIVEPHGLARLWQLAKEKLRLWPF 356
            G ++I F++ EP GL   W   +   +L+PF
Sbjct: 308 YGIVLIAFVLFEPMGLYGRWLKVRTWFQLFPF 339