Pairwise Alignments

Query, 358 a.a., inner-membrane translocator (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 349 a.a., Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  187 bits (475), Expect = 4e-52
 Identities = 126/330 (38%), Positives = 178/330 (53%), Gaps = 14/330 (4%)

Query: 33  LAVAVGIIPFVINDYWASAVMVPFLIWAIAAIGLNILTGYCGQVSLGTGGFMAVGAYACY 92
           L + +  +P+  +D W S     F I A+A IGL I TGY GQ++LG   FM VGAY   
Sbjct: 30  LLLVLATLPWWASDRWVSIGYTTF-ITAVAVIGLQICTGYAGQINLGQSAFMGVGAYGAA 88

Query: 93  KLMTAFPDLNIAICVLLGGVITAAVGVLFGLPSLRIKGFYLAVATLAAQFFLVWLFNKVP 152
             M+A  D   A+  L+GG   A  GV+FGL + RIKGFYLA+ T+AAQ    +L   +P
Sbjct: 89  LAMSAGWDALAAL--LIGGAGAALFGVMFGLTAARIKGFYLALTTIAAQALFHFLVLNLP 146

Query: 153 WFYNYSASGQINAPERTMFGYAITGPNADAAPKYLFCLAFLFVLAWLARNLTRGTIGRSW 212
             +   A G ++    T  G ++    A     Y F    L V+   A  + R   GRS+
Sbjct: 147 QAWLGGAGG-LHVESATALGISLNNDRAI----YGFSFIVLVVMTIGAFGIVRSRHGRSF 201

Query: 213 MAIRDMDIAAEIIGVNPLKAKLTAFAVSSFFVGVAGALFFSVYLGAVEVGEAFGINQSFL 272
            A+RD D+AA ++G+     K  AF VS+F+ GVAG L+  V L  V V E F +  +  
Sbjct: 202 EAVRDDDVAAGMMGIPVAATKARAFLVSAFYAGVAGGLWV-VALRHVSV-EQFTLFNAIW 259

Query: 273 VLFMIIIGGLGSIFGSLAGAAFIVLLPVLLKNVMVGSLGWDTAIAAHFEF----VVLGGL 328
           ++ M+I+GGLGSI G+L G   I L    + ++    + W  A+   F F    V+LG +
Sbjct: 260 MIAMMIVGGLGSIVGALIGTVLIQLAREGVTSLGPSVIQWVPAVGQDFVFAAMNVLLGTV 319

Query: 329 IIFFLIVEPHGLARLWQLAKEKLRLWPFPH 358
           II FL+ EP G+    Q+ K+  RLWPFP+
Sbjct: 320 IILFLLFEPKGVMHRVQITKQAYRLWPFPY 349