Pairwise Alignments

Query, 358 a.a., inner-membrane translocator (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 360 a.a., Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  132 bits (331), Expect = 2e-35
 Identities = 107/280 (38%), Positives = 145/280 (51%), Gaps = 18/280 (6%)

Query: 25  DRMRYYLVLAVAVGIIPFVINDYWASAVMVPFLIWAIAAIGLNILTGYCGQVSLGTGGFM 84
           +R    L+LA+A  + P ++ DY      +  LI+AI   GL ILTGY GQ+SLG G F 
Sbjct: 37  ERTGLVLLLALACAL-PLLVTDYRLFQATMT-LIYAIVLFGLTILTGYSGQISLGHGAFY 94

Query: 85  AVGAYACYKLMTAFPDLNIAICVLLGGVITAAVGVLFGLPSLRIKGFYLAVATLA-AQFF 143
           A+GAY    ++ A   +     + + G +   VG LFG P+LR++G YLA+AT A A   
Sbjct: 95  ALGAYTT-AILIARLGVPYWATLPIAGAVCMVVGFLFGRPALRLQGHYLALATFALAVAT 153

Query: 144 LVWLFNKVPWFYNYSASGQINAPERTMFGYAITGPNADAAPKYLFCLAFLFVLAWLARNL 203
             +L +K    +     G         FG  +T P+A      LF    +FVL    RNL
Sbjct: 154 PQFLKHKSLQGWTGGVQGITLEKPSAPFGLPMT-PDAWLYLLTLFVAVVMFVLG---RNL 209

Query: 204 TRGTIGRSWMAIRDMDIAAEIIGVNPLKAKLTAFAVSSFFVGVAGALFFSVYLGAVEV-- 261
            +G IGR+ +AIRD   AA  +GVN    K  AF+VS+ F GVAG       LGA+ V  
Sbjct: 210 LKGRIGRALLAIRDHPTAASAMGVNISLYKSLAFSVSALFTGVAGG------LGAIVVQF 263

Query: 262 --GEAFGINQSFLVLFMIIIGGLGSIFGSLAGAAFIVLLP 299
              ++F    S L L   +IGGL S +G L GA FI  +P
Sbjct: 264 VAPDSFHPLLSILFLVGAVIGGLSSWWGPLFGAMFIQFVP 303