Pairwise Alignments

Query, 338 a.a., cationic amino acid ABC transporter, periplasmic binding protein (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 342 a.a., amino acid ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  377 bits (967), Expect = e-109
 Identities = 182/331 (54%), Positives = 231/331 (69%)

Query: 8   GALAAAGLAATGAAADTLEEVQARGAVNCGISTGLVGFASQDANGEWQGFDVAVCRAVAA 67
           GA A  GLA+T  A  TL+ +Q +G + CG+S GL GF   D+ G+  G DV VC AVAA
Sbjct: 12  GATAVLGLASTAEAGTTLDAIQKKGFIQCGVSDGLPGFGVPDSKGKMTGIDVDVCHAVAA 71

Query: 68  AVFGDPTAVNFNPVTNQVRFEVLNSGEIDMLARNTTWTFSRDVDLKLEFTGINYYDGQGF 127
           AVFGD + V F  +T + RF  L SGEID+++RNTTWT SRD  + L FTG+ YYDG GF
Sbjct: 72  AVFGDASKVKFTQLTAKERFTALQSGEIDLISRNTTWTSSRDSGMGLVFTGVTYYDGIGF 131

Query: 128 MVPKALGVSSATELDGATVCIQKGTTTELNLADFFRANNISFEPVPISTASEAQQQYLAG 187
           +V   LGV++A +LDGATVCIQ GTTTELN++D+FR + + + P+   TA E+ +   AG
Sbjct: 132 LVNNKLGVTAAKQLDGATVCIQAGTTTELNVSDYFRTHGMKYTPITFDTADESAKGLEAG 191

Query: 188 ACDVYTTDASGLAATRASFESPDEHVVLPEIISKEPLGPLVRHGDNEWGDIVRWTLNALI 247
            CDV TTD SGL A R     PDE VVLPE+ISKEPLGPLVR GD+EW  IV+WTL A++
Sbjct: 192 RCDVLTTDQSGLYAQRIKMAQPDEFVVLPEVISKEPLGPLVRKGDDEWFSIVKWTLFAML 251

Query: 248 AAEELGVTSANVAELAAGTDNPEINRLLGTEGNLGEQLGLSADWAVNVIKAGGNYGEIFE 307
            AEE+G+TS NV E A  T NP++ RLLG +G  G+ L L  DW V ++K  GNYGE+FE
Sbjct: 252 NAEEMGITSQNVEEQAKTTKNPDVARLLGADGEYGKDLKLRKDWVVQIVKQVGNYGEVFE 311

Query: 308 THIGENTPIGLARGLNAQWTEGGLLYAPPFR 338
            +IG+ + + + RGLNA W  GG+ YAPP R
Sbjct: 312 RNIGQGSVLKIKRGLNALWNNGGIQYAPPVR 342