Pairwise Alignments

Query, 338 a.a., cationic amino acid ABC transporter, periplasmic binding protein (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 296 a.a., Glutamate/aspartate ABC transporter, substrate-binding protein GltI (TC 3.A.1.3.4) from Variovorax sp. SCN45

 Score = 73.6 bits (179), Expect = 6e-18
 Identities = 70/257 (27%), Positives = 114/257 (44%), Gaps = 8/257 (3%)

Query: 1   MKKSVLFGALAAAGL-AATGA-AADTLEEVQARGAVNCGISTGLVGFASQDANGEWQGFD 58
           MK SVL  ++AAA L AATGA AADTL ++   G +        V F+  +  G+  GF 
Sbjct: 1   MKSSVLMASMAAAVLLAATGAQAADTLAKIAESGKITLAYRESSVPFSYLEGPGKPIGFS 60

Query: 59  VAVCRAVAAAVFGDPTAVNFN----PVTNQVRFEVLNSGEIDMLARNTTWTFSRDVDLKL 114
           V +  AV  AV       N      PVT+Q R  ++ +G ID+   +TT   +R  D  +
Sbjct: 61  VELSNAVVEAVKKKLNKPNLQVALMPVTSQNRIPLITNGTIDLECGSTTNNTARGKD--V 118

Query: 115 EFTGINYYDGQGFMVPKALGVSSATELDGATVCIQKGTTTELNLADFFRANNISFEPVPI 174
            F   ++Y G   +V K+  +    +L   TV    GTT  L +  +    N+    V  
Sbjct: 119 AFAINHFYTGTRLLVKKSSKIKDYADLAKKTVASTTGTTNVLVMRKYNIEKNLGMNIVLG 178

Query: 175 STASEAQQQYLAGACDVYTTDASGLAATRASFESPDEHVVLPEIISKEPLGPLVRHGDNE 234
              +++     +     +  D   L    A+ ++P +  V+ E +  EP   ++   D  
Sbjct: 179 KDHADSFLLLESDRAAAFAMDDILLFGLIANAKTPSDFEVVGESLQVEPYACMLPKDDPA 238

Query: 235 WGDIVRWTLNALIAAEE 251
           +  +V  T  A++ + E
Sbjct: 239 FKKVVDDTFAAMMKSGE 255