Pairwise Alignments

Query, 338 a.a., cationic amino acid ABC transporter, periplasmic binding protein (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 298 a.a., Glutamate/aspartate ABC transporter, substrate-binding protein GltI (TC 3.A.1.3.4) from Variovorax sp. SCN45

 Score = 91.3 bits (225), Expect = 3e-23
 Identities = 67/238 (28%), Positives = 112/238 (47%), Gaps = 11/238 (4%)

Query: 1   MKKSVLFGALAAAGLAATGA---AADTLEEVQARGAVNCGISTGLVGFASQDANGEWQGF 57
           MKK +L  ALA     ATGA   A DTL +++ RGAVN G+     G A     G++ GF
Sbjct: 1   MKKQLL--ALAVTAFVATGAFAQATDTLAKIKERGAVNLGVRDSS-GLAYTLGGGKYVGF 57

Query: 58  DVAVCRAVAAAV---FGDPTAVNFNPVTNQVRFEVLNSGEIDMLARNTTWTFSRDVDLKL 114
              +   +   +    G P  +++  +T+Q R  ++ +G ID    +TT   +R  D+  
Sbjct: 58  HTEMAERIIDDLSKDVGKPLKIDYQVITSQNRVPLVQNGTIDFECGSTTNNTARQKDVDF 117

Query: 115 EFTGINYYDGQGFMVPKALGVSSATELDGATVCIQKGTTTELNLADFFRANNISFEPVPI 174
            +T   Y +    +     G++   +L G  V    GTT+   L    RA  + F+ V  
Sbjct: 118 AYT--TYVEEVRILTKANSGINGIADLKGKVVATTTGTTSVQTLRKNKRAEGLDFKEVMG 175

Query: 175 STASEAQQQYLAGACDVYTTDASGLAATRASFESPDEHVVLPEIISKEPLGPLVRHGD 232
              +++     +G  D +  D S LAA  A  ++P +  ++ E++S EP+  ++  GD
Sbjct: 176 KDHADSFLLLESGRADAFVMDGSILAANAAKSKNPKDFKMVGEVLSVEPIACMLPKGD 233