Pairwise Alignments

Query, 338 a.a., cationic amino acid ABC transporter, periplasmic binding protein (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 345 a.a., Glutamate/aspartate ABC transporter, substrate-binding protein GltI (TC 3.A.1.3.4) from Variovorax sp. SCN45

 Score =  341 bits (874), Expect = 2e-98
 Identities = 171/335 (51%), Positives = 222/335 (66%), Gaps = 6/335 (1%)

Query: 10  LAAAGLAATGAAAD-----TLEEVQARGAVNCGISTGLVGFASQDANGEWQGFDVAVCRA 64
           LAAA + A  AAA      TL+ V+ RG V CG++ G+ GF++ D  G W G DV  CRA
Sbjct: 11  LAAASVIAFAAAAPAFAGKTLDAVKQRGTVKCGVTNGVAGFSAPDTQGNWSGLDVDTCRA 70

Query: 65  VAAAVFGDPTAVNFNPVTNQVRFEVLNSGEIDMLARNTTWTFSRDVDLKLEFTGINYYDG 124
           +AAAV GD   V+F P+ +Q RF  L +GEID+LARNTTWT +RD  L   FT I YYDG
Sbjct: 71  IAAAVLGDGKKVDFVPLNSQQRFSALQAGEIDILARNTTWTLTRDASLGFNFTTITYYDG 130

Query: 125 QGFMVPKALGVSSATELDGATVCIQKGTTTELNLADFFRANNISFEPVPISTASEAQQQY 184
           QGF+VPK L V+SA +L  AT+C Q GTT E N++D+FRA  I  + V   +   + + +
Sbjct: 131 QGFLVPKKLKVTSAKQLKNATICTQSGTTNEKNVSDYFRAQGIPVKTVVFESFEASFKAF 190

Query: 185 LAGACDVYTTDASGLAATR-ASFESPDEHVVLPEIISKEPLGPLVRHGDNEWGDIVRWTL 243
            +G C  +TTDAS LA  R     +PD++V+LPE+ISKEPL PLVR GD+EW  I +W  
Sbjct: 191 FSGRCQAFTTDASALAGLRNKEAPNPDDYVILPELISKEPLAPLVRRGDDEWFAIAKWVP 250

Query: 244 NALIAAEELGVTSANVAELAAGTDNPEINRLLGTEGNLGEQLGLSADWAVNVIKAGGNYG 303
           NALI AEE GVT AN  EL A + +P   RL+GT  +LG+ LGL  +W+   IKA GNYG
Sbjct: 251 NALIEAEEAGVTQANADELKANSKDPAQQRLVGTGEDLGKLLGLDKEWSFRAIKAVGNYG 310

Query: 304 EIFETHIGENTPIGLARGLNAQWTEGGLLYAPPFR 338
           E+FE ++G  + + L RG N  W++GGL+YAPP R
Sbjct: 311 EMFERNVGPKSVLKLPRGSNNLWSKGGLIYAPPVR 345