Pairwise Alignments

Query, 338 a.a., cationic amino acid ABC transporter, periplasmic binding protein (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 342 a.a., putative amino-acid ABC transporter-binding protein YhdW from Pseudomonas putida KT2440

 Score =  369 bits (947), Expect = e-107
 Identities = 179/330 (54%), Positives = 229/330 (69%)

Query: 9   ALAAAGLAATGAAADTLEEVQARGAVNCGISTGLVGFASQDANGEWQGFDVAVCRAVAAA 68
           A AA G  +T  A  TL+ V+ +G V CG+S GL GF+  DA G+  G D  VCRAVAAA
Sbjct: 13  AAAALGAVSTAQAGATLDAVKKKGFVQCGVSDGLPGFSVPDAQGKIVGIDADVCRAVAAA 72

Query: 69  VFGDPTAVNFNPVTNQVRFEVLNSGEIDMLARNTTWTFSRDVDLKLEFTGINYYDGQGFM 128
           VFGD T V F+ +  + RF  L SGE+D+L+RNTTWT SRD  + L F G+ YYDG GF+
Sbjct: 73  VFGDATKVKFSQLNAKERFTALQSGEVDVLSRNTTWTSSRDAGMGLVFAGVTYYDGVGFL 132

Query: 129 VPKALGVSSATELDGATVCIQKGTTTELNLADFFRANNISFEPVPISTASEAQQQYLAGA 188
           V K LGVSSA ELDGAT+CIQ GTTTELN++DFFRAN + + P+   T+ E+ +   +G 
Sbjct: 133 VNKKLGVSSAKELDGATICIQAGTTTELNVSDFFRANGLKYTPITFDTSDESAKSLESGR 192

Query: 189 CDVYTTDASGLAATRASFESPDEHVVLPEIISKEPLGPLVRHGDNEWGDIVRWTLNALIA 248
           CDV T+D S L A R+   +P E+VVLPE ISKEPLGP+VR GD EW  IV+WTL A++ 
Sbjct: 193 CDVLTSDKSQLFAQRSKLAAPTEYVVLPETISKEPLGPVVRKGDEEWFSIVKWTLFAMLN 252

Query: 249 AEELGVTSANVAELAAGTDNPEINRLLGTEGNLGEQLGLSADWAVNVIKAGGNYGEIFET 308
           AEE G+TS NV   A  T NP++ RLLG +G  G+ L L  DW V ++K  GNYGE+FE 
Sbjct: 253 AEEAGITSKNVEAEAKATKNPDVARLLGADGEYGKDLKLPKDWVVQIVKQVGNYGEVFEK 312

Query: 309 HIGENTPIGLARGLNAQWTEGGLLYAPPFR 338
           ++G++T + + RG+NA W  GG+ YAPP R
Sbjct: 313 NLGQSTDLKIDRGMNALWNNGGIQYAPPVR 342