Pairwise Alignments

Query, 338 a.a., cationic amino acid ABC transporter, periplasmic binding protein (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 342 a.a., amino acid ABC transporter substrate-binding protein from Pseudomonas sp. SVBP6

 Score =  366 bits (940), Expect = e-106
 Identities = 181/340 (53%), Positives = 232/340 (68%), Gaps = 2/340 (0%)

Query: 1   MKKSVLFGALAAAGLAATG--AAADTLEEVQARGAVNCGISTGLVGFASQDANGEWQGFD 58
           M KS L    AA  L+ +G   A  TL+ VQ +G V CG+S GL GF+  DA G   G D
Sbjct: 3   MLKSTLAVVTAATALSISGFAQAGATLDAVQKKGFVQCGVSDGLPGFSVPDAKGNIVGID 62

Query: 59  VAVCRAVAAAVFGDPTAVNFNPVTNQVRFEVLNSGEIDMLARNTTWTFSRDVDLKLEFTG 118
             VCRAVAAAVFGD   V F+ +  + RF  L SGE+D+L+RNTTWT SRD  + L F G
Sbjct: 63  ADVCRAVAAAVFGDAKKVKFSQLNAKERFTALQSGEVDVLSRNTTWTSSRDAGMGLVFAG 122

Query: 119 INYYDGQGFMVPKALGVSSATELDGATVCIQKGTTTELNLADFFRANNISFEPVPISTAS 178
           + YYDG GF+V K LGVSSA ELDGAT+CIQ GTTTELN++D+FRAN + + P+   T+ 
Sbjct: 123 VTYYDGIGFLVNKKLGVSSAKELDGATICIQAGTTTELNVSDYFRANGLKYTPITFDTSD 182

Query: 179 EAQQQYLAGACDVYTTDASGLAATRASFESPDEHVVLPEIISKEPLGPLVRHGDNEWGDI 238
           E+ +   +G CDV T+D S L A R+   +P ++VVLPE ISKEPLGP+VR GD EW  I
Sbjct: 183 ESAKSLESGRCDVLTSDKSQLYAQRSKLAAPADYVVLPETISKEPLGPVVRKGDEEWFSI 242

Query: 239 VRWTLNALIAAEELGVTSANVAELAAGTDNPEINRLLGTEGNLGEQLGLSADWAVNVIKA 298
           V+WTL A++ AEE+G+TS NV   A  T NP++ R+LG +G  G+ L L  DW V ++K 
Sbjct: 243 VKWTLFAMLNAEEMGITSKNVEAEAKATKNPDVARMLGADGEYGKDLKLPKDWVVQIVKQ 302

Query: 299 GGNYGEIFETHIGENTPIGLARGLNAQWTEGGLLYAPPFR 338
            GNYGE+FE ++G+ TP+ + RGLNA W  GG+ YAPP R
Sbjct: 303 VGNYGEVFEKNLGKETPLQIDRGLNALWNNGGIQYAPPVR 342