Pairwise Alignments

Query, 338 a.a., cationic amino acid ABC transporter, periplasmic binding protein (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 282 a.a., transporter substrate-binding domain-containing protein from Pseudomonas fluorescens SBW25

 Score = 70.5 bits (171), Expect = 5e-17
 Identities = 73/274 (26%), Positives = 119/274 (43%), Gaps = 16/274 (5%)

Query: 3   KSVLFGALAAAGLAATGAAADT-LEEVQARGAVNCGISTGLVGFASQDANGEWQGFDVAV 61
           K+ +F   A+A LA+   AAD+ L++V  RG +  G  +    +  Q A+G+ QGFD+ +
Sbjct: 9   KACVFLFAASASLASVVQAADSKLDDVLKRGHLIVGTGSTNAPWHFQGADGKLQGFDIDI 68

Query: 62  CRAVAAAVFGDPTAVNFNPVTNQVRFEVLNSGEIDMLARNTTWTFSRDVDLKLEFTGINY 121
            R VA  +F DP+ V F   ++  R   L + ++DM  +  T T SR    ++ FT   Y
Sbjct: 69  GRIVAKGLFNDPSKVEFVVQSSDARIPNLLTDKVDMSCQFITVTASR--AQQVAFTLPYY 126

Query: 122 YDGQGFMVPKALGVSSATEL----DGATVCI-QKGTTTELNLADFFRANNISFEPVPIST 176
            +G G ++P         +L    DG TV + Q     EL      +A    ++ V +  
Sbjct: 127 REGVGLLLPNNSKYKEIEDLQAAGDGVTVAVLQNVYAEELVHQALPKAKVDQYDSVDL-- 184

Query: 177 ASEAQQQYLAGACDVYTTDASGLAATRASFESPDEHVVLPEIISKEPLGPLVRHGDNEWG 236
                Q   +G  D   TD S +       ++P  +       S +     V+ GD +W 
Sbjct: 185 ---MYQAVNSGRADAAATDQSSVKYLMV--QNPGRYRSPAYAWSPQTYACAVKRGDQDWL 239

Query: 237 DIVRWTLNALIAAEELGVTSANVAELAAGTDNPE 270
           + V   L+  +   E     A+  +   G D PE
Sbjct: 240 NFVNTALHEAMTGVEFPTYKASFKQW-FGVDLPE 272