Pairwise Alignments

Query, 338 a.a., cationic amino acid ABC transporter, periplasmic binding protein (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 302 a.a., amino acid ABC transporter substrate-binding protein from Magnetospirillum magneticum AMB-1

 Score = 79.7 bits (195), Expect = 9e-20
 Identities = 64/252 (25%), Positives = 113/252 (44%), Gaps = 6/252 (2%)

Query: 6   LFGALAAAGLAATGAAADTLEEVQARGAVNCGISTGLVGFASQDANGEWQGFDVAVCRAV 65
           LF ALA         A  TL++V+  G+V  G+       +  D + +  G+ V +CR V
Sbjct: 8   LFLALAVISTGGAARAEPTLDKVKRTGSVVLGVREASYPLSYLDGDKKPIGYHVDICRRV 67

Query: 66  AAAVFGD----PTAVNFNPVTNQVRFEVLNSGEIDMLARNTTWTFSRDVDLKLEFTGINY 121
             AV          V    VT++ R   L  G ID+   +TT   +R    ++ F    Y
Sbjct: 68  TEAVKAQLGLAALEVRTEVVTSKTRIPRLLDGGIDLECGSTTNNAARQT--QVAFAPTTY 125

Query: 122 YDGQGFMVPKALGVSSATELDGATVCIQKGTTTELNLADFFRANNISFEPVPISTASEAQ 181
                  V KA  +   ++LDG  V    G+T+   L    +  +I    +  +  +E+ 
Sbjct: 126 VASVRIAVKKAAHIGKLSQLDGKAVATTAGSTSVQLLKARVQGRDIKVTELFGNDHAESF 185

Query: 182 QQYLAGACDVYTTDASGLAATRASFESPDEHVVLPEIISKEPLGPLVRHGDNEWGDIVRW 241
           +   +     +  D + LA   AS  +P ++ +LP+ ++ EP+  ++R GD E+  +V  
Sbjct: 186 KMLESDQAAAFVMDDNLLAGLIASSAAPKDYQILPQTLNTEPIAIMLRKGDPEFKALVDR 245

Query: 242 TLNALIAAEELG 253
           T+ A++ + E+G
Sbjct: 246 TVKAMMESGEVG 257