Pairwise Alignments

Query, 338 a.a., cationic amino acid ABC transporter, periplasmic binding protein (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 341 a.a., amino acid ABC transporter substrate-binding protein from Erwinia tracheiphila SCR3

 Score =  350 bits (898), Expect = e-101
 Identities = 172/341 (50%), Positives = 231/341 (67%), Gaps = 3/341 (0%)

Query: 1   MKKSVLFGALAAAGLAATGA---AADTLEEVQARGAVNCGISTGLVGFASQDANGEWQGF 57
           MKK +L   +AAA L A      A  TL+ ++ +G V CGIS GL GF+  DA+G++ G 
Sbjct: 1   MKKMMLSTLVAAASLFAVANQAHAGTTLDAIKKKGFVQCGISDGLPGFSFADASGKFSGI 60

Query: 58  DVAVCRAVAAAVFGDPTAVNFNPVTNQVRFEVLNSGEIDMLARNTTWTFSRDVDLKLEFT 117
           DV VCRA AAAVFGD + V + P+T + RF  L SGEID+L+RNTTWT SRD  +   F 
Sbjct: 61  DVDVCRATAAAVFGDASKVKYTPLTAKERFTALQSGEIDILSRNTTWTSSRDAGMGFIFA 120

Query: 118 GINYYDGQGFMVPKALGVSSATELDGATVCIQKGTTTELNLADFFRANNISFEPVPISTA 177
           G+NYYDG GF+  K  G+ SA ELDGATVCIQ GT TELN+AD+F+ANN+ + PV    +
Sbjct: 121 GVNYYDGIGFLTHKKAGLKSAKELDGATVCIQAGTDTELNVADYFKANNMQYTPVTFDRS 180

Query: 178 SEAQQQYLAGACDVYTTDASGLAATRASFESPDEHVVLPEIISKEPLGPLVRHGDNEWGD 237
            E+ +    G CD   +D S L A R     PDE +VLPE+ISKEPLGP+VR GD++W  
Sbjct: 181 DESAKALDTGRCDTLASDQSQLYALRIKLGKPDEFIVLPEVISKEPLGPVVRRGDDDWYT 240

Query: 238 IVRWTLNALIAAEELGVTSANVAELAAGTDNPEINRLLGTEGNLGEQLGLSADWAVNVIK 297
           IV+W+L A++ AEE+G+TS NV ++A+    P++  LLG+EG+ G+ L L   WA N++K
Sbjct: 241 IVKWSLFAMLNAEEMGITSQNVDQMASKPSTPDMAHLLGSEGDFGKDLKLDNKWAYNIVK 300

Query: 298 AGGNYGEIFETHIGENTPIGLARGLNAQWTEGGLLYAPPFR 338
             GNY EIF+  +G+++ + + RG NA W +GG+ YAPP R
Sbjct: 301 QVGNYQEIFDRSVGKDSQLKITRGQNALWNKGGIQYAPPVR 341