Pairwise Alignments

Query, 338 a.a., cationic amino acid ABC transporter, periplasmic binding protein (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 341 a.a., ABC-type amino acid transport/signal transduction systems, periplasmic component/domain from Enterobacter asburiae PDN3

 Score =  357 bits (916), Expect = e-103
 Identities = 176/340 (51%), Positives = 226/340 (66%), Gaps = 4/340 (1%)

Query: 3   KSVLFGALAAAGL----AATGAAADTLEEVQARGAVNCGISTGLVGFASQDANGEWQGFD 58
           K  +  +LAAAG+    A    A  TL+ V+ +G V CGIS GL GF+  DANG++ G D
Sbjct: 2   KKTMIASLAAAGMLFAVAGQAHAGTTLDAVKKKGFVQCGISDGLPGFSYADANGKFTGID 61

Query: 59  VAVCRAVAAAVFGDPTAVNFNPVTNQVRFEVLNSGEIDMLARNTTWTFSRDVDLKLEFTG 118
           V VCR VAAAVFGD + V + P+T + RF  L SGE+DML+RNTTWT SRD  + + FTG
Sbjct: 62  VDVCRGVAAAVFGDDSKVKYTPLTAKERFTALQSGEVDMLSRNTTWTSSRDAGMGMSFTG 121

Query: 119 INYYDGQGFMVPKALGVSSATELDGATVCIQKGTTTELNLADFFRANNISFEPVPISTAS 178
           + YYDG GF+     G+ SA ELDGATVCIQ GT TELN+AD+F+ANN+ + PV    + 
Sbjct: 122 VTYYDGIGFLTHNKAGLKSAKELDGATVCIQAGTDTELNVADYFKANNMKYTPVTFDRSD 181

Query: 179 EAQQQYLAGACDVYTTDASGLAATRASFESPDEHVVLPEIISKEPLGPLVRHGDNEWGDI 238
           E+ +   +G CD   +D S L A R    +P E +VLPE+ISKEPLGP+VR GD +W  I
Sbjct: 182 ESAKALESGRCDTLASDQSQLYALRIKLSNPAEWIVLPEVISKEPLGPVVRRGDEDWFSI 241

Query: 239 VRWTLNALIAAEELGVTSANVAELAAGTDNPEINRLLGTEGNLGEQLGLSADWAVNVIKA 298
           VRWTL A++ AEE+G+ S NV E AA   NP++  LLG EG+ G+ L L   WA N+IK 
Sbjct: 242 VRWTLFAMLNAEEMGINSKNVDEKAAKPSNPDMAHLLGKEGDFGKDLKLDNKWAYNIIKQ 301

Query: 299 GGNYGEIFETHIGENTPIGLARGLNAQWTEGGLLYAPPFR 338
            GNY EIFE ++G  +P+ + RG N  W  GG+ YAPP R
Sbjct: 302 VGNYSEIFERNVGSESPLKIKRGQNNLWNNGGIQYAPPVR 341