Pairwise Alignments

Query, 338 a.a., cationic amino acid ABC transporter, periplasmic binding protein (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 341 a.a., Putative amino-acid ABC transporter-binding protein YhdW from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score =  351 bits (901), Expect = e-101
 Identities = 174/340 (51%), Positives = 225/340 (66%), Gaps = 4/340 (1%)

Query: 3   KSVLFGALAAAGLAATGA----AADTLEEVQARGAVNCGISTGLVGFASQDANGEWQGFD 58
           K ++   LAAA +    A    A  TL+ VQ +G V CGIS GL GF+  DA+G++ G D
Sbjct: 2   KKMMIATLAAASVLLAVANQAHAGATLDAVQKKGFVQCGISDGLPGFSYADADGKFSGID 61

Query: 59  VAVCRAVAAAVFGDPTAVNFNPVTNQVRFEVLNSGEIDMLARNTTWTFSRDVDLKLEFTG 118
           V +CR VAAAVFGD T V + P+T + RF  L SGE+D+L+RNTTWT SRD  + + FTG
Sbjct: 62  VDICRGVAAAVFGDDTKVKYTPLTAKERFTALQSGEVDLLSRNTTWTSSRDAGMGMAFTG 121

Query: 119 INYYDGQGFMVPKALGVSSATELDGATVCIQKGTTTELNLADFFRANNISFEPVPISTAS 178
           + YYDG GF+     G+ SA ELDGATVCIQ GT TELN+AD+F+ANN+ + PV    + 
Sbjct: 122 VTYYDGIGFLTHDKAGLKSAKELDGATVCIQAGTDTELNVADYFKANNMKYTPVTFDRSD 181

Query: 179 EAQQQYLAGACDVYTTDASGLAATRASFESPDEHVVLPEIISKEPLGPLVRHGDNEWGDI 238
           E+ +   +G CD   +D S L A R    +P E +VLPE+ISKEPLGP+VR GD+EW  I
Sbjct: 182 ESAKALESGRCDTLASDQSQLYALRIKLSNPAEWIVLPEVISKEPLGPVVRRGDDEWFSI 241

Query: 239 VRWTLNALIAAEELGVTSANVAELAAGTDNPEINRLLGTEGNLGEQLGLSADWAVNVIKA 298
           VRWTL A++ AEE+G+ S NV E AA    P++  LLG EG+ G+ L L   WA N+IK 
Sbjct: 242 VRWTLFAMLNAEEMGINSQNVDEKAANPATPDMAHLLGKEGDYGKDLKLDNKWAYNIIKQ 301

Query: 299 GGNYGEIFETHIGENTPIGLARGLNAQWTEGGLLYAPPFR 338
            GNY EIFE ++G  +P+ + RG N  W  GG+ YAPP R
Sbjct: 302 VGNYSEIFERNVGSESPLKIKRGQNNLWNNGGIQYAPPVR 341