Pairwise Alignments

Query, 338 a.a., cationic amino acid ABC transporter, periplasmic binding protein (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 297 a.a., amino acid ABC transporter substrate-binding protein from Agrobacterium fabrum C58

 Score = 77.4 bits (189), Expect = 4e-19
 Identities = 60/215 (27%), Positives = 94/215 (43%), Gaps = 7/215 (3%)

Query: 23  DTLEEVQARGAVNCGISTGLVGFASQDANGEWQGFDVAVCRAVAAAVFG----DPTAVNF 78
           DTL+++     +  G       F+ Q  NGE  GF   +CRA++  +      D   + +
Sbjct: 26  DTLQQIAKTAKIRIGYREAEPPFSYQLPNGEITGFSTDLCRAISEDIRSKLKLDKIELEY 85

Query: 79  NPVTNQVRFEVLNSGEIDMLARNTTWTFSRDVDLKLEFTGINYYDGQGFMVPKALGVSSA 138
              T   RF ++ SG+ID+    TT    R   +  +F+  N+     F+  K   + S 
Sbjct: 86  VKATPATRFILVRSGQIDIECAATTNNSERRKIV--DFSYPNFMTATQFLSRKQDNLKSL 143

Query: 139 TELDGATVCIQKGTTTELNLADFFRANNISFEPVPISTASEAQQQYLAGACDVYTTDASG 198
            +L G +V    GT     L    RA N++   +P  T  EA    +AG    +  D   
Sbjct: 144 ADLAGRSVTSASGTVNIEQLNAVNRAKNLNISVMPTKTNEEAFDLVVAGKASAFVMDGIL 203

Query: 199 LAATRASFESPDEHVVLPEIIS-KEPLGPLVRHGD 232
           LAA  A+ E+PD + +  E +S  EP G + R  D
Sbjct: 204 LAALAATSENPDLYALSEETLSAPEPYGLVFRRND 238