Pairwise Alignments

Query, 379 a.a., succinyl-diaminopimelate desuccinylase (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 375 a.a., N-succinyl-diaminopimelate deacylase from Escherichia coli BL21

 Score =  237 bits (604), Expect = 5e-67
 Identities = 141/377 (37%), Positives = 201/377 (53%), Gaps = 9/377 (2%)

Query: 5   VALTADLIRCPSVTPEEGGALSLLEARLSAAGFACTRVDRNGIANLFARWGEKGHARSFG 64
           + LT  LIR PS++P++ G  +LL  RL A GF   R+D     N    W  +G   +  
Sbjct: 6   IELTQQLIRRPSLSPDDAGCQALLIERLQAIGFTVERMDFADTQNF---WAWRGQGETLA 62

Query: 65  FNGHTDVVPVGARADWRFDPFGAQVEGDWMYGRGAVDMKSAVAAFAAAAMDFVADTPPD- 123
           F GHTDVVP G    W   PF   +    ++GRGA DMK ++AA   AA  FVA  P   
Sbjct: 63  FAGHTDVVPPGDADRWINPPFEPTIRDGMLFGRGAADMKGSLAAMVVAAERFVAQHPNHT 122

Query: 124 GAVILAITGDEEGDAKDGTVALLDWMAAQGEAMDVCLVGEPTCPDEMGEMMKIGRRGSMT 183
           G +   IT DEE  A +GTV +++ + A+ E +D CLVGEP+  + +G+++K GRRGS+T
Sbjct: 123 GRLAFLITSDEEASAHNGTVKVVEALMARNERLDYCLVGEPSSIEVVGDVVKNGRRGSLT 182

Query: 184 FFFEALGVQGHSAYPHRAKNPLPALAKLVDRLAGLELDTGTDHFDPSTLAVTTFDTGNPA 243
                 GVQGH AYPH A NP+   A  ++ L  +E D G + F  +++ +     G  +
Sbjct: 183 CNLTIHGVQGHVAYPHLADNPVHRAAPFLNELVAIEWDQGNEFFPATSMQIANIQAGTGS 242

Query: 244 NNVIPAACRATVNIRFNDAHSSESLTAMVRGIAAEVAAETGIEITDRVSVSGESFITPPG 303
           NNVIP       N RF    S+E    M++     +  +  +  T    +SG+ F+T  G
Sbjct: 243 NNVIPGELFVQFNFRF----STELTDEMIKAQVLALLEKHQLRYTVDWWLSGQPFLTARG 298

Query: 304 RLSDLVAAAVETETGRVPVLSTSGGTSDARFV-QHHCPVVEFGLVGKSMHQVDERVAIAQ 362
           +L D V  AVE      P L T+GGTSD RF+ +    VVE G V  ++H+++E V  A 
Sbjct: 299 KLVDAVVNAVEHYNEIKPQLLTTGGTSDGRFIARMGAQVVELGPVNATIHKINECVNAAD 358

Query: 363 IPQLKAIYTRILRDYFA 379
           +  L  +Y RI+    A
Sbjct: 359 LQLLARMYQRIMEQLVA 375