Pairwise Alignments

Query, 379 a.a., succinyl-diaminopimelate desuccinylase (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 398 a.a., succinyl-diaminopimelate desuccinylase from Agrobacterium fabrum C58

 Score =  355 bits (910), Expect = e-102
 Identities = 202/394 (51%), Positives = 246/394 (62%), Gaps = 20/394 (5%)

Query: 2   TDPVALTADLIRCPSVTPEEGGALSLLEARLSAAGFACTRVDRN-----GIANLFARWGE 56
           TDPVA  A LIRCPSVTP EGGALSLL+  LS  GFA  RV         + NL+AR G 
Sbjct: 4   TDPVANLAALIRCPSVTPAEGGALSLLDTLLSPLGFAVERVMATEDGTPDVENLYARLGT 63

Query: 57  KGHARSFGFNGHTDVVPVGARADWRFDPFGAQVEGDWMYGRGAVDMKSAVAAFAAAAMDF 116
           +G    F   GHTDVVPVG  A W   PF A + G  MYGRGAVDMK  +A F AA    
Sbjct: 64  EGPHLMFA--GHTDVVPVGDEAAWSHPPFSADIAGGEMYGRGAVDMKGGIACFVAAIARH 121

Query: 117 VADT-PPDGAVILAITGDEEGDAKDGTVALLDWMAAQGEAMDVCLVGEPTCPDEMGEMMK 175
           +     P G+V   ITGDEEG + +GT  LL+W AA+GE  D C+VGEPT PD++G+M+K
Sbjct: 122 IGKHGKPQGSVSFLITGDEEGPSINGTSKLLEWAAAKGETWDACVVGEPTNPDQLGDMIK 181

Query: 176 IGRRGSMTFFFEALGVQGHSAYPHRAKNPLPALAKLVDRLAGLELDTGTDHFDPSTLAVT 235
           IGRRGS++      GVQGH+AYPH A NP+  L +L   L     D GTD F PS L VT
Sbjct: 182 IGRRGSLSGRITVQGVQGHAAYPHLADNPIRGLLQLTHALMHPAFDHGTDDFQPSNLEVT 241

Query: 236 TFDTGNPANNVIPAACRATVNIRFNDAHSSESLTA-MVRGIAAEVAAETGIEITDRVSVS 294
           T DTGN A NVIPA   A  NIRFND+ ++ESL A ++R +  + AA  G    DR  V 
Sbjct: 242 TVDTGNAATNVIPARATAAFNIRFNDSWTAESLRAEIIRRL--DAAANEGELRPDRAPVK 299

Query: 295 GE---------SFITPPGRLSDLVAAAVETETGRVPVLSTSGGTSDARFVQHHCPVVEFG 345
            E          F+T    L   ++ A+ET TG+ P LST+GGTSDARF++ +CPVVEFG
Sbjct: 300 YEIVWADRPSHVFLTRNNALISSLSGAIETVTGKEPKLSTTGGTSDARFIKDYCPVVEFG 359

Query: 346 LVGKSMHQVDERVAIAQIPQLKAIYTRILRDYFA 379
           LVG++MH VDERVA+A +  L  IY   +  +FA
Sbjct: 360 LVGQTMHMVDERVAVADLETLTRIYETFIERWFA 393