Pairwise Alignments

Query, 285 a.a., RNA polymerase sigma factor RpoH from Dickeya dianthicola ME23

Subject, 284 a.a., RNA polymerase, sigma 32 subunit, RpoH from Pseudomonas syringae pv. syringae B728a

 Score =  340 bits (872), Expect = 2e-98
 Identities = 173/286 (60%), Positives = 216/286 (75%), Gaps = 3/286 (1%)

Query: 1   MTKDMQ-TFALVPQGSLEGYIRAANAYPMLTAEEERALAERLHYHGDLDAAKQLILSHLR 59
           MT  +Q  +ALVP  +LE Y++  N+ P+LT E ER LAE L+Y  DLDAA+Q++L+HLR
Sbjct: 1   MTTSLQPAYALVPGANLEAYVQTVNSIPLLTPERERELAESLYYEQDLDAARQMVLAHLR 60

Query: 60  FVIHVARNYSGYGLPQADLIQEGNIGLMKAVRRFNPDVGVRLVSFAVHWIKAEIHEYVLR 119
           FV+H+AR+YSGYGL QADLIQEGN+GLMKAV+RFNP++GVRLVSFAVHWIKAEIHE++LR
Sbjct: 61  FVVHIARSYSGYGLAQADLIQEGNVGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEFILR 120

Query: 120 NWRIVKVATTKAQRKLFFNLRKTKQRLGWFNQDEVELVARELGVTSKDVREMESRMAAQD 179
           NWRIVKVATTKAQRKLFFNLR  K+RL W N DEV  VA  LGV  ++VREMESR+   D
Sbjct: 121 NWRIVKVATTKAQRKLFFNLRSQKKRLAWLNNDEVHRVAESLGVEPREVREMESRLTGHD 180

Query: 180 MTFDPSPEDDAQPGQPMAPMLYLQDKSSDFADGIEEDNWETHAADKLTYALEGLDERSQH 239
           M FDP+ E D       +P  YL+D   D A  +E+ +W  ++   L  AL+ LDERS+ 
Sbjct: 181 MAFDPAAEAD-DDSAFQSPANYLEDHRYDPARQLEDSDWTDNSTANLHQALDVLDERSRD 239

Query: 240 IIRARWLDDDNKSTLQELADHYGVSAERIRQLEKNAMKKLRVAIEA 285
           I+  RWL ++ K+TL +LA  Y VSAERIRQLEK+AM KL+ +I A
Sbjct: 240 ILYQRWLAEE-KATLHDLAQKYNVSAERIRQLEKSAMNKLKTSIAA 284