Pairwise Alignments

Query, 720 a.a., DNA helicase II from Dickeya dianthicola ME23

Subject, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

 Score =  399 bits (1026), Expect = e-115
 Identities = 256/645 (39%), Positives = 375/645 (58%), Gaps = 18/645 (2%)

Query: 10  LNDKQRDAVAAARSNMLVLAGAGSGKTRVLVHRIAWLLTVENCSPYSIMAVTFTNKAAAE 69
           LN +Q +AV       LVLAGAGSGKTRV+ ++IA+L+        +I AVTFTNKAA E
Sbjct: 3   LNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAARE 62

Query: 70  MRHRIDQLLGTGQG-GMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLLKRLIK 128
           M+ R+ Q LG G+  G+ + TFH L   ++R      GL   F + D +DQL LLK L +
Sbjct: 63  MKERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKELTE 122

Query: 129 ALNLDEKQWPPRQAMWYINGKKDEGLRPQHIDSYGNPVEQT-WLRIYQAYQEACDRAGLV 187
              LD  +   R  +  I+  K++ L P    +     +Q  +   ++ YQ+       +
Sbjct: 123 K-QLDGDKDLLRLLLSTISNWKNDMLTPPQAKAMAKGEQQLLFAHCFELYQKQMQSYNAL 181

Query: 188 DFAELLLRAHELWLNKPHILQHYRDRFNNILVDEFQDTNRIQYAWIRLLAGDGAKVMIVG 247
           DF +L+L    L  +   + Q +++R   +LVDE+QDTN  QY  ++LL G+  ++ +VG
Sbjct: 182 DFDDLILLPVLLLRSNEEVRQRWQNRIRYLLVDEYQDTNTSQYELVKLLVGERGRLTVVG 241

Query: 248 DDDQSIYGWRGAQVENIQHFLRDFSDVTTIRLEQNYRSTANILNAANALIAHNGDRLGKN 307
           DDDQSIY WRGA+ +N+     DF  +  I+LEQNYRST+ IL AAN LIA+N     K 
Sbjct: 242 DDDQSIYSWRGAKPQNLVLLGEDFPSLKLIKLEQNYRSTSRILRAANILIANNPHVYQKA 301

Query: 308 LWTDGIDGEPISLYCAFNELDEARFVVSRIKVWQEAGGA-LSECAILYRSNAQSRVLEEA 366
           L+++  +GE + +  A NE  EA  V++ I   +        + AILYR N QSR++E++
Sbjct: 302 LFSELAEGEKLKVILANNEDHEAERVIAEIIAHKFLNRTEYRDYAILYRGNHQSRLIEKS 361

Query: 367 LLQQSLPYRIYGGMRFFERQEIKDALSYLRLMANRNDDAAFERVVNTPTRGIGDRTLDVV 426
           L Q  +PY++ GG  FF R EIKD ++YLR++ N +DD AF R+VNTP R IG  TL+ +
Sbjct: 362 LTQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVNTPKREIGPATLEKL 421

Query: 427 RQTARDRQLTLWQATRALLQEKVLAGRAAAALQRFLELVDALASDTADLPLHVQTDR-VI 485
              A  R  +L+ A+  L  E+ L+GR    L+RF E + A+A D A+    V+  R ++
Sbjct: 422 GSYANMRGKSLFTASFELGLEQHLSGRGLENLRRFTEWLVAIA-DNAERGNTVEAVRALV 480

Query: 486 RDSGL--WSMYEQEKGEK-GQARVENLEEL---VTATRQFSYQDEDQDLLP--LQAFLSH 537
           RD     W +YE     K  + R++N+ +L   + A  +    D+ +  L   +Q     
Sbjct: 481 RDIRYEDW-LYETSASPKAAEMRMKNVSDLYSWIVADLEGDNPDQQEKTLKEVVQRLTLR 539

Query: 538 AALEAGEGQADAYQDAVQLMTLHSAKGLEFPQVFVVGMEEGMFPSQMSLDEGGRLEEERR 597
             +E GE   D+  DAVQLMTLH++KGLEFP V+++G EEG+ P Q S+DE   +EEERR
Sbjct: 540 DMMERGEENDDS--DAVQLMTLHASKGLEFPYVYLIGAEEGILPHQTSIDE-ENVEEERR 596

Query: 598 LAYVGVTRAMQKLTLTYAESRRLYGKETYHRPSRFIGELPTECVE 642
           L YVG+TRA ++LT    + RR +G+      SRF+ ELP + +E
Sbjct: 597 LMYVGITRAQRELTFIVCKERRQFGELIKPSQSRFLDELPQDDIE 641