Pairwise Alignments

Query, 790 a.a., DNA polymerase II from Dickeya dianthicola ME23

Subject, 801 a.a., DNA polymerase II (RefSeq) from Shewanella amazonensis SB2B

 Score =  618 bits (1593), Expect = 0.0
 Identities = 356/778 (45%), Positives = 476/778 (61%), Gaps = 28/778 (3%)

Query: 8   QGFVLTRHWQDTPAGVLVECWLATDTGPYRVRLSPQQAVAFVPMRHQARISQLL--SGEK 65
           +G VLTR         ++E  + T  GP +V +  Q+ +AF    H   + +LL    E 
Sbjct: 21  RGRVLTRANVQRSGDTVLEYLIKTVNGPVKVEVHNQRPMAFC---HSDDVERLLVEGAET 77

Query: 66  HWQLRPLALKNFHHEPQLGLYCPQYRQLLRLEKKLQEAGIPVYEADIRPPERFLMERFIT 125
                PL L++F  +P   +YC     L RL  + QE GI +YEADI+P +RFL+ERF+ 
Sbjct: 78  EVWSHPLELQSFSRQPVHAIYCRTGLMLKRLVNRAQELGIALYEADIKPEQRFLIERFVA 137

Query: 126 APVWFSGEETADGLIDNV--KLKPAPDYRPSLKTVSLDIETSRHGELYCIGLEGCGQRQV 183
               F G   + G    V  +++    + P LK VSLDIE S  GELY IGL G  + +V
Sbjct: 138 LDAEFFGHFDSSGPSRFVASRVRATSQHIP-LKAVSLDIECSMSGELYSIGLYGDCEPKV 196

Query: 184 FMLGPENGNADDAGD-----LTLEYVASRPQLLEKLNQWLHTHDPDVIIGWNLVQFDLRV 238
            ++G          D     + +E+      LL  L +W    DPD+++GW +V FDL +
Sbjct: 197 IIVGEGETELTCHRDGVEHKVAVEWACDEVALLLSLQRWFMEVDPDILLGWAVVTFDLSL 256

Query: 239 LQQHAERYRIPLRLGRNGQELEWREHGYRQGHFFAGAPGRLIVDGIEALKSATWNFASFS 298
           L + A+ + + L +GR G+ L W+     +        GR+++DGI+ LK+A + F SF+
Sbjct: 257 LWRRAKHHGMRLCIGRFGKPLAWKVEDKHRPETL-DLSGRVVLDGIDWLKAAFYQFDSFA 315

Query: 299 LEFVSRALLGEGKASDNPYQRLEEIEQRFQQDKPALARYNLKDCELVTRIFEKTHLMSFL 358
           L+ V+  LLGEGKA  NP  R EEI + F++DK ALA YNL DC LV  IF+KT L+ F 
Sbjct: 316 LDRVAGELLGEGKAIHNPDDRGEEITRLFREDKAALAYYNLTDCRLVWDIFQKTDLIHFA 375

Query: 359 LERASVTGLAADRSGGSVAAFTHLYLPRMHRAGFVAPNLGEVPPEASPGGYVMDSRPGLY 418
           LERA +TGL   R G S+AAF HLYLP +HRAGFVAP +  VP   SPGGYVMDS PGLY
Sbjct: 376 LERARLTGLEFGRVGASIAAFNHLYLPHLHRAGFVAPAMQTVPGPDSPGGYVMDSVPGLY 435

Query: 419 DSVLVLDYKSLYPSIIRTFLIDPVGLITGLQQPDEQHAVEGFRGAWFSRRQHCLPAIVEG 478
            +VLVLDYKSLYPSIIRTFLIDP GL+ GL +P E  +VEGFRGA FSR+   LP +V  
Sbjct: 436 RNVLVLDYKSLYPSIIRTFLIDPKGLVLGLSEP-EAMSVEGFRGARFSRQSPILPKLVAT 494

Query: 479 IWHERDLAKQQNNQPLSQALKIIMNAFYGVLGSSGCRFFDPRLASSITLRGHDIMRQTRS 538
           +   R+ AK   N P+SQA+KIIMN+ YGVLGS GC F D RLASSITLRGH+IMR T++
Sbjct: 495 LASRREEAKANQNGPMSQAVKIIMNSLYGVLGSRGCVFHDYRLASSITLRGHEIMRTTKA 554

Query: 539 LIEAKGYQVIYGDTDSTFVWLKRPHREDDANLIGHELVAYINDWWQQHLHQQHGLTSALE 598
            IEA+G+QVIYGDTDSTFVWL       +A   G  LV  +N  W++ L +  GL   LE
Sbjct: 555 WIEAEGFQVIYGDTDSTFVWL--GDEAGNAKATGRALVDMVNQRWREQLREDKGLECFLE 612

Query: 599 MEYETHFHRFLMPTIRGAELGSKKRYAGMTITAQGEQMVFKGLETVRSDWTPLAQQFQQQ 658
           +E+E HF +F MPT+R +  GSKKRY G+      + +VFKG+E VRSDW+PLA++ Q +
Sbjct: 613 LEFERHFEQFFMPTLRHSTEGSKKRYVGLYDNGNEKVLVFKGMEQVRSDWSPLARRVQYE 672

Query: 659 LYQRIFHRESYQEWVREYVAKTLNGEYDDLLVYRKRLRHKLSDYQRNVPPQVRAARM--- 715
           LY+R+F +E+  E+V+E      +GE DD LV+ KRL+  +S Y     P V+AA +   
Sbjct: 673 LYRRLFQQENLTEYVQEVEKSLYSGELDDELVFHKRLKRDISQYTAKSAPHVKAAALLVS 732

Query: 716 -ADDYNRRHDRPLQYQSGGWISYVITVNGPEPLENRRSPLDYNHYVEKQLQPVADAIL 772
              D NR        + G  I Y+ T  G EPL  +  P+DY++Y ++QL P+ + IL
Sbjct: 733 ATGDANRG-------KRGAAIRYLFTKAGAEPLGFQSQPIDYDYYYDRQLLPILEPIL 783