Pairwise Alignments

Query, 453 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Dickeya dianthicola ME23

Subject, 455 a.a., UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase (RefSeq) from Shewanella amazonensis SB2B

 Score =  374 bits (960), Expect = e-108
 Identities = 217/450 (48%), Positives = 286/450 (63%), Gaps = 8/450 (1%)

Query: 1   MIRVSLRQLADVLGARLVGEDLTISEVSTDTRKLTTGCLFVALRGEKFDAHDYAADAVNH 60
           MI +SL QLA     RL GED+ +S + +D+RK+T G LFVAL+GE+FD H++A  A   
Sbjct: 1   MIPLSLTQLAAATHGRLCGEDVVVSHLDSDSRKMTVGSLFVALKGERFDGHEFAEAAAAA 60

Query: 61  GAAALLVSKHLPIEVPQLVVDDTRLALGTMAGWVRQQSRARVVALTGSSGKTSVKEMTAA 120
           GA+ALLV + LP+ +PQLVV DT+ A+G +   VR       VALTGS+GKTSVKEM A 
Sbjct: 61  GASALLVERELPLALPQLVVADTQKAMGQIGALVRDSVNPVCVALTGSNGKTSVKEMVAT 120

Query: 121 ILRQCGNVLYTAGNFNNDIGVPLTLFRLAPEHDYAVIELGANHIGEIAYTTAMVRPEAAL 180
           +L Q  +VL+TAGNFNN+IGVPLTL RL   H+Y V ELGANH GEI YT+++VRP  +L
Sbjct: 121 VLSQHHSVLFTAGNFNNEIGVPLTLLRLEQGHEYGVFELGANHKGEIDYTSSLVRPSVSL 180

Query: 181 VNNLAAAHLEGFGSLDGVAQAKGEIFSGLPAQGVAIVNADSHDEARWHDALTGKTRWRFS 240
           VNN+ +AHLEGFGS  GVA+AK EI+  L   GV IVN D        + L GK    F 
Sbjct: 181 VNNVGSAHLEGFGSEAGVAEAKSEIYLHLAQDGVGIVNLDDRYAETMLNKLKGKRVLTFG 240

Query: 241 PQARAGVDFYASDVGISERGT-DFVLHTPAGAVAVTLPLPGRHNIANALAAAALSLAVGA 299
               AG +  A +V     G   F L      V V+LPL G+H ++NALA AA+ +A+G 
Sbjct: 241 --LGAGAEITAREVTADAFGRYSFYLCHGGDHVTVSLPLAGKHQVSNALATAAICIALGL 298

Query: 300 PLDAVKTGLAQLQAVPGRLFPIALAPGKLLL-DDSYNANVGSMTAAAQVLAEMPGYRVMV 358
           PL  +  GLA+L  V GR+ P  L  G+LLL DDSYNAN  S+ AA   L E+   R +V
Sbjct: 299 PLQEIAAGLAKLAPVKGRMMPRQL--GRLLLVDDSYNANPNSVGAAIDWLKEISTNRTLV 356

Query: 359 VGDMAELGLGAQACHRQVGEAARKANIDKVLSVGTLSAFIGDVSGAGEHFDNKTALIDRL 418
           +GD+ ELG  A   H ++G+ A++A +D +  +G+LS       G+ +HF+   AL+  L
Sbjct: 357 LGDLGELGDNAALLHFELGQKAKEAGLDSLFCLGSLSRHASQAFGS-KHFEELDALVSEL 415

Query: 419 RTLVT-QHNTITVLIKGSRSAAMEQVVHAL 447
              +      +T+L+KGSRSAAME+VV AL
Sbjct: 416 INYINGVEGDVTLLVKGSRSAAMERVVEAL 445