Pairwise Alignments

Query, 453 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Dickeya dianthicola ME23

Subject, 488 a.a., UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase (NCBI) from Rhodospirillum rubrum S1H

 Score =  201 bits (512), Expect = 3e-56
 Identities = 147/440 (33%), Positives = 216/440 (49%), Gaps = 18/440 (4%)

Query: 23  TISEVSTDTRKLTTGCLFVALRGEKFDAHDYAADAVNHGAAALLVSKHLPIEVPQ---LV 79
           T + V  D+R +  G LF+AL GE+ D H +   A+  GA+A LVS+ +P  +     LV
Sbjct: 35  TATGVCIDSRAVVAGDLFIALAGERTDGHAHVEAALTAGASAALVSR-IPAGIATDRLLV 93

Query: 80  VDDTRLALGTMAGWVRQQSRARVVALTGSSGKTSVKEMTAAILRQCGNVLYTAGNFNNDI 139
           V+DT   L  +A   R +   ++V +TGS GKT  KEM    L + G V  T GN NN  
Sbjct: 94  VEDTLEGLWALARASRARFAGKLVGVTGSLGKTGTKEMLTQALGRFGRVHATEGNLNNHF 153

Query: 140 GVPLTLFRLAPEHDYAVIELGANHIGEIAYTTAMVRPEAALVNNLAAAHLEGFGSLDGVA 199
           G+PLTL R+  + D AVIELG NH GE+     + RP  A++ N+AA HLE F S++ +A
Sbjct: 154 GLPLTLARMPADTDLAVIELGMNHPGELGPLARLARPHVAIITNVAAVHLEFFDSVEAIA 213

Query: 200 QAKGEIFSGLPAQGVAIVNADSHDEARWHDALTGK-TRWRFSPQARAGVDFYASDVGISE 258
            AK EI  G+   G  ++N D+    R   A   +      S     G D    D  +  
Sbjct: 214 DAKAEILEGVEPGGTVVLNRDNRFFERLRRAAAARGIDKTLSFGNHIGADARVLDCAVDA 273

Query: 259 RGTDFVLHTPAGAVAVTLPLPGRHNIANALAAAALSLAVGAPLDAVKTGLAQLQAVPGRL 318
            GT          +A  + + GRH   N+L   A+  A+G  + +   GLA +    GR 
Sbjct: 274 NGTAVFALIGDDPLAYRMAVEGRHWALNSLGVLAVVRALGLDIHSAANGLANVVPPRGRG 333

Query: 319 FPIALAPGK----LLLDDSYNANVGSMTAAAQVLAEM----PGYRVMVVGDMAELGLGAQ 370
              +++ G      ++DD+YNA+  S+ AA   L+       G R+ V+GDM ELG  A 
Sbjct: 334 RRQSVSLGGDGAIQVIDDAYNASPESVIAALTTLSMTRPGPRGRRIAVLGDMLELGPQAA 393

Query: 371 ACHRQVGEAARKANIDKVLSVGTLSAFIGD---VSGAGEHFDNKTALIDRLRTLVTQHNT 427
             H  + + + +  ID V + G L A + D    S  G H  +  AL   +  L      
Sbjct: 394 KLHADLAKISVERGIDLVYTAGPLMAHLHDALPASRRGGHAPDADALTPLV--LAALRPG 451

Query: 428 ITVLIKGSRSAAMEQVVHAL 447
             V++KGS+ + + + V AL
Sbjct: 452 DVVMVKGSKGSLVSRTVTAL 471