Pairwise Alignments

Query, 453 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Dickeya dianthicola ME23

Subject, 479 a.a., UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  202 bits (514), Expect = 2e-56
 Identities = 161/462 (34%), Positives = 221/462 (47%), Gaps = 46/462 (9%)

Query: 21  DLTISEVSTDTRKLTTGCLFVALRGEKFDAHDYAADAVNHGAAALLVSK---HLPIEVPQ 77
           D  ++ VS DTR+L  G LFVAL   + D HD+ A A+  GA A LVS+    +  + P 
Sbjct: 21  DWAVTGVSIDTRELAPGDLFVALTAAR-DGHDFVAQALAAGAGAALVSRIPEGVAEDAPL 79

Query: 78  LVVDDTRLALGTMAGWVRQQSRARVVALTGSSGKTSVKEMTAAILRQCGNVLYTAGNFNN 137
           L+V D + AL  +    R ++ ARV+A+TGS GKTS KEM  A L   G       +FNN
Sbjct: 80  LLVPDVQTALEALGRAGRARTEARVIAITGSVGKTSAKEMMRAALASQGRAHAAERSFNN 139

Query: 138 DIGVPLTLFRLAPEHDYAVIELGANHIGEIAYTTAMVRPEAALVNNLAAAHLEGFGSLDG 197
             GVPLTL R+    + AVIE+G NH GEIA    M RP AAL+  +AAAHLE  GSL+ 
Sbjct: 140 HWGVPLTLARMPAGTEVAVIEIGMNHPGEIAPLARMARPHAALITTIAAAHLEALGSLEA 199

Query: 198 VAQAKGEIFSGLPAQGVAIVNADSHDEARWHDALTGKTRWRFSPQARAGVDFYASDVGIS 257
           +A  K  IF GL   G+A++  D         A         +  A A ++ + +  G +
Sbjct: 200 IAVEKASIFEGLEPDGLAVIPGDLPQTPILRAA---------AEDAGARIESFGTGAGNT 250

Query: 258 ERGTDF-VLHTPAGA--------VAVTLPLPGRHNIANALAAAALSLAVGAPLDAVKTGL 308
            R +D   + T A A        +A+ +  PG H +  AL   A    VGA        L
Sbjct: 251 HRLSDVQAVGTAAVARAQLSGAEMALKIATPGTHFLETALGVLACVAGVGADPARALMAL 310

Query: 309 AQLQAVPGR-------LFPIALAPGKLLLDDSYNANVGSMTAAAQVLAE----------M 351
                  GR       L P+  A    L+DD++NAN  SM AA  +LA+           
Sbjct: 311 GAWAPPSGRGTRERLQLDPVIEAMSIELIDDAFNANPTSMGAALDMLAQAAPAHDIGRIA 370

Query: 352 PGYRVMVVGDMAELGLGAQACHRQVGEAARKANIDKVLSVG----TLSAFIGDVSGAGEH 407
            G R+ ++GDM ELG    A H  +      A I  V  VG     L A + +    G  
Sbjct: 371 KGRRIAILGDMLELGPDEAAMHAALAAHPAMAQITLVHCVGPRMQALHAALPE-DKRGRW 429

Query: 408 FDNKTALIDRLRTLVTQHNTITVLIKGSRSAAMEQVVHALQE 449
            +   AL+     LV   +   VL+KGS+ + +  VV AL++
Sbjct: 430 VETAQALVPHAHALVDAGD--VVLVKGSKGSRVSLVVDALRK 469