Pairwise Alignments

Query, 453 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Dickeya dianthicola ME23

Subject, 460 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase (RefSeq) from Shewanella sp. ANA-3

 Score =  369 bits (946), Expect = e-106
 Identities = 218/456 (47%), Positives = 289/456 (63%), Gaps = 15/456 (3%)

Query: 1   MIRVSLRQLADVLGARLVGEDLTISEVSTDTRKLTTGCLFVALRGEKFDAHDYAADAVNH 60
           MI +SL  L+  L A  VG+D+TI  +S+D+RK+    LFVAL+GE+FD HD+AA A+ +
Sbjct: 1   MIPISLEALSQHLSAHRVGDDVTIQALSSDSRKIGPATLFVALKGERFDGHDFAATAIEN 60

Query: 61  GAAALLVSKHLPIEVPQLVVDDTRLALGTMAGWVRQQSRARVVALTGSSGKTSVKEMTAA 120
           GA ALLV + L  +VPQL+V D + A+G +  +VR Q     VALTGS+GKTSVKEM A 
Sbjct: 61  GAVALLVERQLAFDVPQLIVADCQKAMGAIGAYVRDQVDPICVALTGSNGKTSVKEMIAT 120

Query: 121 ILRQCGNVLYTAGNFNNDIGVPLTLFRLAPEHDYAVIELGANHIGEIAYTTAMVRPEAAL 180
           IL     VLYTAGNFNN+IGVPLTL RL  E  Y V ELGANH GEI YT+++VRP  AL
Sbjct: 121 ILSAKHQVLYTAGNFNNEIGVPLTLLRLTSEDKYGVFELGANHKGEIDYTSSLVRPHVAL 180

Query: 181 VNNLAAAHLEGFGSLDGVAQAKGEIFSGLPAQGVAIVNADSHDEARWHDALTGKTR---- 236
           VNN+ +AHLEGFGS  GVAQAK EI++ L   G AI+NAD      + D +  K +    
Sbjct: 181 VNNVGSAHLEGFGSQAGVAQAKSEIYNHLQPGGTAIINADD----AFADVMRVKAKQYKQ 236

Query: 237 WRFSPQ---ARAGVDFYASDVGISERGT-DFVLHTPAGAVAVTLPLPGRHNIANALAAAA 292
             FS Q   A+  +D  A+    +  G   F+L+    +  VTLPL GRH ++NALAAA+
Sbjct: 237 LSFSQQEGAAKRQIDVIATGHKANSEGCYRFILNYAGESCEVTLPLAGRHQVSNALAAAS 296

Query: 293 LSLAVGAPLDAVKTGLAQLQAVPGRLFPIALAPGKLLLDDSYNANVGSMTAAAQVLAEMP 352
           + +A+G  L  +  GL+QL  V GR+ P  L   + L+DDSYNAN  S+ AA   L E+ 
Sbjct: 297 VCIALGLSLKEIAEGLSQLTPVKGRMQPTQLGRVR-LIDDSYNANPVSVGAAIAWLKEIS 355

Query: 353 GYRVMVVGDMAELGLGAQACHRQVGEAARKANIDKVLSVGTLSAFIGDVSGAGEHFDNKT 412
             R +V+GD+ ELG  A   H ++G+ A++  ID +   GTL+       GA EH D+  
Sbjct: 356 ENRCLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCTGTLTQHTSQAFGA-EHHDSVA 414

Query: 413 ALIDRLRTLVTQ-HNTITVLIKGSRSAAMEQVVHAL 447
            L+++L   + Q    +TVL+KGSRSAAME+VV  L
Sbjct: 415 TLVEKLIKHINQLPGQVTVLVKGSRSAAMERVVDGL 450