Pairwise Alignments

Query, 393 a.a., outer membrane protein assembly factor BamB from Dickeya dianthicola ME23

Subject, 623 a.a., PQQ-dependent dehydrogenase, methanol/ethanol family from Pseudomonas stutzeri RCH2

 Score = 52.8 bits (125), Expect = 3e-11
 Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 19/154 (12%)

Query: 31  KMSPLPQV--TNQFTPTKVWSRSVGDGIGEFYSNLHPIWQDSRVYAADRHGTVKALDLNS 88
           + SPL QV  +N F  T  WS S GD       +   I  D  +Y    +  V ALD  +
Sbjct: 63  RWSPLAQVNESNVFKLTPAWSFSFGDEKQRGQES-QAIVHDGVIYVTGSYSRVFALDAKT 121

Query: 89  GEEKWRADLAEKTGLLSSNRPA--LLSGGVAVSGNHVYVGSERAQLFALNADDGTLQWQT 146
           G+  W    +    L    RP   +++ G A+ G+ +Y G+  A++ ALN D G + W  
Sbjct: 122 GKRLW----SYAHRLPDDIRPCCDVVNRGAAIYGDKIYFGTLDARVVALNKDTGKVVWNK 177

Query: 147 K----VAGEVLSS--PVVSDG----MVIIHTSNG 170
           K     AG  ++    +V DG    ++++H S+G
Sbjct: 178 KFGDHAAGYTMTGAPTLVKDGKTGKVLLVHGSSG 211



 Score = 38.5 bits (88), Expect = 5e-07
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 11/83 (13%)

Query: 249 DTTPVVASNVVYALGYNGNLTALDLRSGQITWKREIGSVNDF-----------IVDGDRI 297
           ++  +V   V+Y  G    + ALD ++G+  W       +D             + GD+I
Sbjct: 95  ESQAIVHDGVIYVTGSYSRVFALDAKTGKRLWSYAHRLPDDIRPCCDVVNRGAAIYGDKI 154

Query: 298 YLVDQDDRITALNTNGGVVIWRQ 320
           Y    D R+ ALN + G V+W +
Sbjct: 155 YFGTLDARVVALNKDTGKVVWNK 177



 Score = 34.3 bits (77), Expect = 1e-05
 Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 13/110 (11%)

Query: 48  WSRSVGDGIGEFYSNLHPIWQDSRVYAADRHGTVKALDLNSGEEKWRADLAEKTGLLSSN 107
           W+  V    G  Y  L   ++  R+Y  D  G ++A++  +G+ +W              
Sbjct: 472 WTEEVSYKKGSAY--LGQGFRIKRMYD-DHVGILRAMNPTTGKIEWE----------HKE 518

Query: 108 RPALLSGGVAVSGNHVYVGSERAQLFALNADDGTLQWQTKVAGEVLSSPV 157
           +  L +G +A  GN ++ G+      A NA  G   W+ +    V+S PV
Sbjct: 519 KLPLWAGVLATKGNLIFTGTSDGYFKAFNAKTGDELWKFQTGSGVISPPV 568



 Score = 30.4 bits (67), Expect = 1e-04
 Identities = 32/141 (22%), Positives = 54/141 (38%), Gaps = 14/141 (9%)

Query: 154 SSPVVSDGMVIIHTSNGMLQALSESDGTIKWTVNLDMPSLSLRGESAPTAAFGAAIVGGD 213
           S  +V DG++ +  S   + AL    G   W+    +P   +R         GAAI G  
Sbjct: 96  SQAIVHDGVIYVTGSYSRVFALDAKTGKRLWSYAHRLPD-DIR-PCCDVVNRGAAIYGDK 153

Query: 214 ------NGRVSAVMINQGQLIWQQRISQPG------GATEIARLNDVDTTPVVASNVVYA 261
                 + RV A+  + G+++W ++           GA  + +        +V  +    
Sbjct: 154 IYFGTLDARVVALNKDTGKVVWNKKFGDHAAGYTMTGAPTLVKDGKTGKVLLVHGSSGDE 213

Query: 262 LGYNGNLTALDLRSGQITWKR 282
            G  G L A D  +G+  W R
Sbjct: 214 FGIVGKLFARDPETGEEVWMR 234