Pairwise Alignments

Query, 375 a.a., hydrogenase nickel incorporation protein HypB from Dickeya dianthicola ME23

Subject, 264 a.a., hydrogenase accessory protein HypB (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  212 bits (540), Expect = 8e-60
 Identities = 112/272 (41%), Positives = 155/272 (56%), Gaps = 30/272 (11%)

Query: 85  HAHDHHDHQHHDHEQHDHAEHHHTHKHAQPEARFQPVEREQHLHYGQGAAGTHAPGLGQQ 144
           H+    +H HH    HDH+ H H   H  P+                         L  +
Sbjct: 12  HSAIQQEHDHHTGHSHDHS-HIHQQLHTNPQ-------------------------LNDK 45

Query: 145 RLLQIEMDVLSKNNQLAVHNREHFDASQILALNLVSSPGSGKTTLLTSTLHLLR-ERVPC 203
           + L +   +L KN+  A HNR HF+A  I A NL+SSPGSGKTTLL    HL    ++  
Sbjct: 46  KTLSVIHKILDKNDVEAAHNRAHFEAHHITAFNLMSSPGSGKTTLLE---HLKEYTKLNY 102

Query: 204 AVIEGDQQTTNDAERIRATGVPAIQVNTGKGCHLDAQMVHDAMHRLQLPAHSLLFIENVG 263
           AVIEGD +T+ DA+R+ A G+ A Q+ TG  CHLDA MVH A+H L L    + F+ENVG
Sbjct: 103 AVIEGDLETSRDADRLIAKGIKAHQIQTGSACHLDAFMVHGALHHLPLEGVDICFVENVG 162

Query: 264 NLVCPAGFDLGERHKVAVLSVTEGEDKPLKYPHMFAAASLMIINKTDLLPYLDFDLEACV 323
           NLVCPA +D+G    + +LSV EG+DK  KYP MF  A L++I K DLLPY DF ++   
Sbjct: 163 NLVCPASYDVGTHKNIVLLSVPEGDDKIEKYPVMFRRADLVLITKCDLLPYFDFSVDEAK 222

Query: 324 ANARRVNPHIEVIALSARTGEGIEAWLAWLEA 355
              +++NP+ +++ +S + G+ + A  AWL +
Sbjct: 223 TQLKKLNPNTQILEVSIKDGDSMHAVAAWLNS 254