Pairwise Alignments

Query, 240 a.a., RNA polymerase sigma factor FliA from Dickeya dianthicola ME23

Subject, 244 a.a., RNA polymerase sigma factor, FliA/WhiG family from Pseudomonas stutzeri RCH2

 Score =  132 bits (333), Expect = 5e-36
 Identities = 79/213 (37%), Positives = 125/213 (58%), Gaps = 13/213 (6%)

Query: 19  RYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLSAVERYDSLQGTAFTTYAVQRIRGA 78
           +Y+PLV+    +L ++    ++ +D+ Q G IGLL  + RY       F  +A  RIRGA
Sbjct: 31  QYLPLVKRIVRQLSLQANQVLDREDMEQIGMIGLLEGLRRYGE-PDEQFGRFAALRIRGA 89

Query: 79  MLDELRSRDWAPRSVRRNAREVAQAMQQAEQSLGRAPTEQEVAQTLNISLEEYRQILLDT 138
           +LDELR +DW PR VR+ A +V  A+++  + LG +P+++E+     +  ++Y+  L   
Sbjct: 90  ILDELRRQDWRPRQVRQQAHKVRDAIRELTRQLGHSPSDEEIKTFTGLDEKDYQAFLWAD 149

Query: 139 NNSQLFSYDEWREEHGDSAEALLEGNEEANPLNQLMDVN-LRQRVMD-AIDNLPEREKMV 196
           ++  + S D          E L  G+E      +L +   L++R+++ A+  L ERE++V
Sbjct: 150 SSEAIESLD----------ELLQSGHEHFPDTAELFEERLLKERLLEQALSRLDERERLV 199

Query: 197 LTLYYQEELNLKEIGAVLEVGESRVSQLHSQAI 229
           LTLYYQ EL+LKEI  VLEV ++RV QL  QAI
Sbjct: 200 LTLYYQHELSLKEIALVLEVSDARVCQLSKQAI 232