Pairwise Alignments

Query, 240 a.a., RNA polymerase sigma factor FliA from Dickeya dianthicola ME23

Subject, 241 a.a., RNA polymerase sigma factor, FliA/WhiG family from Pseudomonas stutzeri RCH2

 Score =  219 bits (559), Expect = 3e-62
 Identities = 122/220 (55%), Positives = 153/220 (69%), Gaps = 4/220 (1%)

Query: 19  RYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLSAVERYDSLQGTAFTTYAVQRIRGA 78
           +Y PLV+  A  L  RLPASV++DDL+QAG IGLL A ++YD+ +G +F TYA  RIRG 
Sbjct: 18  QYAPLVKRIAYHLLARLPASVQVDDLIQAGMIGLLEAAKKYDAGKGASFETYAGIRIRGT 77

Query: 79  MLDELRSRDWAPRSVRRNAREVAQAMQQAEQSLGRAPTEQEVAQTLNISLEEYRQILLDT 138
           MLDE+R  DWAPRSV RN+R V++A++  E   GR   + EVA  L +SL+EY  IL DT
Sbjct: 78  MLDEVRKGDWAPRSVHRNSRMVSEAIRTIEAKTGRDAKDHEVAAELKLSLDEYYGILGDT 137

Query: 139 NNSQLFSYDEWRE--EHGDSAEALLEGNEEANPLNQLMDVNLRQRVMDAIDNLPEREKMV 196
             S+LFS+D+  +  EHG+  E     + E  P   L D   +Q ++DAI NLPEREK+V
Sbjct: 138 LGSRLFSFDDLLQEGEHGELQEDAASLHPE--PFRDLEDERFQQALVDAIANLPEREKLV 195

Query: 197 LTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRAKL 236
           L+LYY EELNLKEIG VL V ESRVSQLHSQ   RLRA+L
Sbjct: 196 LSLYYDEELNLKEIGQVLGVSESRVSQLHSQCAARLRARL 235