Pairwise Alignments

Query, 240 a.a., RNA polymerase sigma factor FliA from Dickeya dianthicola ME23

Subject, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

 Score =  198 bits (503), Expect = 9e-56
 Identities = 109/235 (46%), Positives = 158/235 (67%), Gaps = 3/235 (1%)

Query: 5   YTAEGTMDKNSLW-KRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLSAVERYDSLQ 63
           Y   G ++   L+ ++Y  LV+  A  L  RLP SV ++DL+QAG +GLL A + YD  +
Sbjct: 7   YDQYGNLNSQQLFLEKYSVLVKRIAHHLIGRLPPSVLIEDLIQAGMVGLLEAQKNYDGSK 66

Query: 64  GTAFTTYAVQRIRGAMLDELRSRDWAPRSVRRNAREVAQAMQQAEQSLGRAPTEQEVAQT 123
           G +F TYA  RIRGAMLD++R  DW PRSV ++ RE++QA+   E  L R PT+ EVA+ 
Sbjct: 67  GASFETYAGIRIRGAMLDDIRRGDWVPRSVHKHNREISQAIAVLEGELNRDPTDAEVAKF 126

Query: 124 LNISLEEYRQILLDTNNSQLFSYDEWREEHGDSAEALLEGNEEANPLNQLMDVNLRQRVM 183
           LN+SLE+Y  +L+D N S++   ++      D A +  E  E+ +P + + + + R+ ++
Sbjct: 127 LNMSLEQYHSVLMDINCSRIVGIEDLGV--SDDAISPFEEGEDNSPFHGVAEESFRKALV 184

Query: 184 DAIDNLPEREKMVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRAKLMS 238
           ++I +LPERE +VL+LYY EELNLKEIG VL V ESRVSQ+ SQ+++RLR KL S
Sbjct: 185 ESIKSLPEREALVLSLYYDEELNLKEIGEVLGVSESRVSQILSQSMQRLRTKLSS 239