Pairwise Alignments

Query, 240 a.a., RNA polymerase sigma factor FliA from Dickeya dianthicola ME23

Subject, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

 Score = 73.6 bits (179), Expect = 5e-18
 Identities = 61/223 (27%), Positives = 112/223 (50%), Gaps = 17/223 (7%)

Query: 29  LRLQVRLPA-----SVELDDLLQAGGIGLLSAVERYDSLQGTAFTTYAV----QRIRGAM 79
           LRL V++        + L DL++ G +GL+ AVE++D  +G  F+TYA     Q I  A+
Sbjct: 100 LRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAL 159

Query: 80  LDELRSRDWAPRSVRRNAREVAQAMQQAEQSLGRAPTEQEVAQTLNISLEEYRQILLDTN 139
           +++ R+    P  V +      +  ++  Q L   PT +E+A  L+  +++  ++L    
Sbjct: 160 MNQTRTIR-LPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKML--RL 216

Query: 140 NSQLFSYDEWREEHGDSAEA-LLEGNEEANPLNQLMDVNLRQRVMDAIDNLPEREKMVLT 198
           N ++ S D      GD A   +L  +  A+P     D ++R+ +++ +D L  ++K VL 
Sbjct: 217 NERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLA 276

Query: 199 ----LYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRAKLM 237
               L   E   L+E+G  + +   RV Q+  + ++RLR  L+
Sbjct: 277 RRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILV 319