Pairwise Alignments

Query, 240 a.a., RNA polymerase sigma factor FliA from Dickeya dianthicola ME23

Subject, 684 a.a., RNA polymerase sigma factor RpoD from Sinorhizobium meliloti 1021

 Score = 77.8 bits (190), Expect = 5e-19
 Identities = 56/232 (24%), Positives = 109/232 (46%), Gaps = 17/232 (7%)

Query: 18  KRYVPLVRHEALRLQVRLPASV---------ELDDLLQAGGIGLLSAVERYDSLQGTAFT 68
           +R   + + E +   +RL  S+         +  DL+Q G IGL+ AV++++  +G  F+
Sbjct: 440 EREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS 499

Query: 69  TYAVQRIRGAMLDELRSRDWA---PRSVRRNAREVAQAMQQAEQSLGRAPTEQEVAQTLN 125
           TYA   IR A+   +  +      P  +     ++ +  +Q    +GR PT +E+A+ L 
Sbjct: 500 TYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLA 559

Query: 126 ISLEEYRQILLDTNNSQLFSYDEWREEHGDSAEALLEGNEEANPLNQLMDVNLRQRVMDA 185
           + LE+ R++L               EE     +  +E      P++  +  NLR+     
Sbjct: 560 MPLEKVRKVLKIAKEPISLETPVGDEEDSHLGD-FIEDKNALLPIDAAIQANLRETTTRV 618

Query: 186 IDNLPEREKMVLTLYYQEELN----LKEIGAVLEVGESRVSQLHSQAIKRLR 233
           + +L  RE+ VL + +   +N    L+E+G    V   R+ Q+ ++A+++L+
Sbjct: 619 LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 670